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This is a second question related to previous post: Is this mixed ANOVA correctly specified in R?

To reiterate, the setup is as follows:

  • Groups: two groups of 8 subjects (16 total)
  • Two conditions: alert and passive
  • Measurements: responses for three different stimuli (A, B, and C) measured in each condition

Experiment: Testing the order of conditions

  • Group one: Alert A, B and C followed by Passive A, B, and C
  • Group two: Passive A, B, and C followed by Alert A, B, and C

New Question:

  • If I wanted to use the responses measured in the passive condition as a co-variate to the alert responses, how would I perform an ANCOVA analysis in R?

I am not sure how to handle this considering the repeated factors and between subject measures.

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