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I am looking for a way to do nonlinear partial least squares in R or matlab. I thought kernel pls was a way to do it but it is not directly related to nonlinear pls. Do I have to calculate my own nonlinear kernel matrix and pass it to kernel pls? Any hint would be appreciated.

Update: I don't think there is any direct way to do nonlinear pls in R or matlab. But I found a package kernlab that can be useful when you deal with kernels for nonlinearity. I think this can be a good start point.

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Have you checked the package pls.pcr from the CRAN?

Here is a link to the help page.

The mvr function has an option method="kernelPLS" that seem fairly easy to use.

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Thanks for your answer. I recognized those packages but I hoped that I can easily specify nonlinear kernels with them. But I guess I have to make my own. – david Jun 4 '12 at 13:33

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