I have 3 lists of significant hits (p-value < 0.05). I also adjusted for multiple comparison problem and added q-values to each list. These 3 lists (hits) also partially overlap. For the hits that overlap I was wondering if it makes sense to average the q-value? So, for instance,
Hit X (List1): pval=0.004, qval=0.0045
Hit X (List2): pval=0.0006, qval=0.0006
Hit X (List3): pval=0.02, qval=0.04
Therefore, to summarize my findings I would add to "Hit X" an average q-val of (0.0045+0.0006+0.04)/3 = 0.0150.
Not sure if that makes sense though?