Partial Least Squares

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Joint k-linear regressions

I would like to learn simultaneously $k$ linear maps $\{\phi_0, \dots ,\phi_{k-1} \}$ at the same time: $min \sum_{i=0}^{k-1} \sum_{j=i+1}^{k-1}||X_i \phi_i - X_j \phi_j||_2^{2}$, such that ...
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13 views

Is it possible to combine bayesian SEM with PLS SEM?

I have already read some books about both two structural equation models. It seems both SEMs are suitable to the situation with small observations and large variables. I assume to use combine both ...
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4 views

Loadings shoot up in last few components in Partial Least Squares

I'm trying out the partial least squares method of applying regression to a set of highly collinear predictor variables. When using the pls r package, I noticed ...
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34 views

Explaining PLS-DA to a layman

I recently learned about PLS-DA in a statistics class. I am able to perform PLS-DA mathematically, but I am having trouble really explaining it. I was wondering if anyone could help me with how to ...
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1answer
210 views

PCA and PLS: testing variables for significance

I'm trying to understand the process for statistical testing for principal component analysis or partial least squares. Step 1. PCA: I feel that I have a not-terrible understanding of PCA: You find ...
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123 views

STATISTICA 12 for SEM data analysis [closed]

I'm a graduate student pursuing Ph.D. in Information Systems. My dissertation research involves using structural equation modeling (SEM-PLS) as a main data analysis method. After comparing various ...
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89 views

Testing significant difference between two determination coefficients $R^{2}$ for two PLS-based structural equation models

Two structural equation models were tested (one was based on a sample with 199 individuals and the second one on a sample with 93 individuals). The aim was to test whether the results of the first ...
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1answer
186 views

Choosing number of components in PLS - without minimum in RMSEP

I use the plsr formula in R and the oscorespls algoritm for analysing my datasets. The datasets are characterized by relatively few number of observations (22), one ...
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1answer
124 views

What variable importance criterion?

A student of mine developed a heuristic supervised machine learning algorithm for highly multivariate data. It seems to work pretty well, and once the model has been derived from the training data ...
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57 views

Variance explained for PLS

Using sklearn in Python, I can calculate the explained variance for PCA (sklearn.decomposition.PCA) using: ...
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196 views

PLS-DA with binary predictors in R (package mixOmics)

I am trying to analyse a dataset with at minimum 50 explanatory variables coded as 0 and 1 for presence/absence and a binary response variable (case/control). The goal is to see how the variables can ...
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1answer
391 views

Why does increasing the number of bootstrapped cases make PLS coefficients significant?

I am running a PLS model with a low number of observations ($n=50$). While several pieces of academic work argue that this sample size is appropriate to run this type of model, I am quite confused ...
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448 views

What are guidelines for SmartPLS boostrapping case size?

In SmartPLS, bootstrapping is used to generate the t statistic from which statistical significance can be judged. The two main bootstrapping parameters are case and sample size. Increasing the sample ...
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1answer
160 views

What's the best way to choose data for Crossvalidation on linear regression settings (PCA, PLS)

We are extracting features from EEG, which is a time dependent signal. We have signals of 10,000 datapoints over 64 channels, and we extract 10 features per timestamp per channel, so at the end we ...
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1answer
66 views

How do you determine the effect of a simple predictor variable after a PLS analysis?

So, I am running PLS on a genetic dataset with phenotypic and genotypic information. I have about 1000 binary predictors (X), representing molecular markers, for each individual. My indicator ...
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90 views

How do you predict the value of new instance, when the training data were normalized?

I estimated a Partial Least Squares model where the X matrix had normalized columns. Now I want to predict the value for a new instance (which is a frequency vector summing to one.) I assume that if I ...
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1answer
126 views

Under what conditions can a PLS regression model be expressed by single linear equation?

I am confused by two, yet inconsistent for me, facts: Since the PLS regression is expressed by matrices of scores and loadings as $$X=TP^T+E\\Y=UQ^T+F$$ how it can be translated into linear equation ...
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215 views

Dimension reduction technique [closed]

As i know, PCA and PLS are two famous methods of dimension reduction Could you please name for other (neural network is it useful)?
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1answer
310 views

How to fit data with nonlinear partial least squares in R?

I am looking for a way to do nonlinear partial least squares in R or matlab. I thought kernel pls was a way to do it but it is not directly related to nonlinear pls. Do I have to calculate my own ...
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1answer
497 views

Combining principal component analysis and partial least squares

I know PCA and PLS are considered as alternative method to each other. But I am thinking about a kind of combination of the two in case of lots of predictors with little variability. In that case, ...
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1answer
304 views

how to find a linear combination of predictors maximizing correlation between its score and dependent variable in R

Please correct me if I am wrong as I am not good at R. I think I can find a linear combination maximizing correlation between predictors and dependent variables by running partial least squares ...
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98 views

PLS regression is not working on weighted data

I was running PLS regression on the data which is weighted and gives the following error message: ...
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1answer
3k views

PLS in R with the pls package

I am very new in PLS and I try to understand the output of the R function plsr(). Let us simulate data and run the PLS: ...
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1answer
824 views

PCA, LDA, CCA, and PLS

How are PCA, LDA, CCA, and PLS related? They all seem "spectral" and linear algebraic and very well understood (say 50+ years of theory built around them). They are used for very different things PCA: ...
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1answer
450 views

Measuring predictive accuracy for multiple dependent variables

In machine learning and in statistics there exist plenty of measures which estimate the performance of a predictive model. For example, classification accuracy, area under ROC curve ... for ...
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251 views

What, if any, dissimilarity is preserved in partial least squares (PLS)?

When we perform a principal components analysis (PCA) on a multivariate data set we are interested in finding orthogonal components that explain maximal variance in the data set. We can form a biplot ...
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2answers
1k views

How to compute the confidence intervals on regression coefficients in PLS?

The underlying model of PLS is that a given $n \times m$ matrix $X$ and $n$ vector $y$ are related by $$X = T P' + E,$$ $$y = T q' + f,$$ where $T$ is a latent $n \times k$ matrix, and $E, ...