Partial Least Squares

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Calculate the variance explained in matrix Y by matrix X

I have two matrices corresponding to the same set of $n$ samples, with $j$ and $k$ variables, respectively ($j > 10000$, $k > 10000$). $X$ is an $n \times j$ matrix and $Y$ is an $n \times k$ ...
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1answer
28 views

Does it make sense to calculate Q2 and R2 values on PLS-DA models?

Since PLS-DA is a computational technique which deals with outcomes expressed as a categorical variable (e.g. "Yellow","Brown","Black","Green") I cannot understand how it is possible to calculate Q2 ...
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14 views

interpret the PLS regression

I'm giving you a bit of background before asking my question. I've done a univariate PLS regression where I came out with many models. My boss asked to interpret the PLS regression for the best ...
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1answer
98 views

large variables and low sample (p > n) problem: ridge , LASSO, PLS, PCR which is most suitable for predictions

I am trying see whether to go for ridge regression, LASSO or principal component regression (PCR) or Partial Least Squares (PLS) in a situation where there are large number of variables / features (p) ...
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18 views

PLS regression analysis based on Likert scale

Can dependent variable for PLS be based on Likert scale? As i understand, dependent variable needs to be continuous. I wish to multiply frequency (i.e. integer value 3) with rating coming from ...
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54 views

How can i show mathematically Partial Least Square Regression is better than other Ordinary Least Square Regression?

I want to develop techniques for attribute selection (important independent variable X) using Partial least square 2 regression(PLS2R) for a large data sets .Initially i tried using multivariate ...
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1answer
40 views

Partial least squares regression for categorical factor in R

I adjust the partial least squares regression for one categorical factor (2 levels – be or nottobe) with with the ...
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1answer
33 views

Partial Least Squares structural equation modeling

Im calculating a Structural Equation model with Partial Least Squares (with R). Lets say a simple example: two Response values (R1, R2) are combined to a latent variable RespLV = weight1*R1 + ...
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36 views

Quality of PLS Regression at different interaction levels

I am fairly new to multivariate statistics and have run into the following situation: I have a data set of 12 response sets based on a Likert scale (1-5), data which is commonly (in social research) ...
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34 views

Calculating influence for PLS with outer loadings and beta coefficient of latent variable

I'm calculating a penalized least squares regression (PLS). Two influence variables are connected to a latent variable. This latent variable has an influence (beta coefficient) of 0.6 on the response ...
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1answer
136 views

What is the difference between loadings and correlation loadings in pca and pls?

One common thing to do when doing Principal Component Analysis (pca) is to plot two loadings against each other to investigate the relationships between the variables. In the paper accompanying the ...
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20 views

Variable Construct (Dimension) Insertion (Representation) in SmartPLS

I have a question please. I am working on SmartPLS. The question is regarding variable construct representation. Any variable could have construct including dimensions. For example, the ...
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23 views

Do significant control variables need to be eliminated from statistical analysis in general and SmartPLS specificly?

I have been told that we need to eliminate control factors that shows a significant impact on the dependent variable from the model. As I know that control variables are variables that have testified ...
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53 views

Model assumptions of partial least squares (PLS)

I am trying to find information regarding the assumptions of PLS regression (single Y). I am especially interested in a comparison of the assumptions of PLS with regards to those of OLS regression. ...
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1answer
59 views

How many principal components on a PLS with SAS

I'm doing a PLS regression with SAS. My man-a asked me to do find the numbers of principal components for the dataset I'm working with through SAS. As I've never done that before, I'm confused on how ...
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1answer
77 views

Top R package for PLS regression? [closed]

I'm very new to R and PLS-regression. I would like to know, based on your experience, which R packages for PLS-regression are most highly recommended. My area of application is chemistry.
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1answer
39 views

step by step analysis for GDP forecast with PLS and SAS

I'm currently trying to do a forecast of GDP , although I'm new to the econometric field , with SAS and the Partial Least Square method. My question is the following: Does anyone have any articles ...
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1answer
43 views

PLS Regression and collinearity

From what i know PLS regression is used when there is more variables than observations and when there exist multicollinearity between the independent variables. I have data for a regression model that ...
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27 views

Joint k-linear regressions

I would like to learn simultaneously $k$ linear maps $\{\phi_0, \dots ,\phi_{k-1} \}$ at the same time: $min \sum_{i=0}^{k-1} \sum_{j=i+1}^{k-1}||X_i \phi_i - X_j \phi_j||_2^{2}$, such that ...
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23 views

Is it possible to combine bayesian SEM with PLS SEM?

I have already read some books about both two structural equation models. It seems both SEMs are suitable to the situation with small observations and large variables. I assume to use combine both ...
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7 views

Loadings shoot up in last few components in Partial Least Squares

I'm trying out the partial least squares method of applying regression to a set of highly collinear predictor variables. When using the pls r package, I noticed ...
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84 views

Explaining PLS-DA to a layman

I recently learned about PLS-DA in a statistics class. I am able to perform PLS-DA mathematically, but I am having trouble really explaining it. I was wondering if anyone could help me with how to ...
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1answer
512 views

PCA and PLS: testing variables for significance

I'm trying to understand the process for statistical testing for principal component analysis or partial least squares. Step 1. PCA: I feel that I have a not-terrible understanding of PCA: You find ...
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170 views

STATISTICA 12 for SEM data analysis [closed]

I'm a graduate student pursuing Ph.D. in Information Systems. My dissertation research involves using structural equation modeling (SEM-PLS) as a main data analysis method. After comparing various ...
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122 views

Testing significant difference between two determination coefficients $R^{2}$ for two PLS-based structural equation models

Two structural equation models were tested (one was based on a sample with 199 individuals and the second one on a sample with 93 individuals). The aim was to test whether the results of the first ...
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1answer
322 views

Choosing number of components in PLS - without minimum in RMSEP

I use the plsr formula in R and the oscorespls algoritm for analysing my datasets. The datasets are characterized by relatively few number of observations (22), one ...
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2answers
156 views

What variable importance criterion?

A student of mine developed a heuristic supervised machine learning algorithm for highly multivariate data. It seems to work pretty well, and once the model has been derived from the training data ...
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306 views

PLS-DA with binary predictors in R (package mixOmics)

I am trying to analyse a dataset with at minimum 50 explanatory variables coded as 0 and 1 for presence/absence and a binary response variable (case/control). The goal is to see how the variables can ...
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1answer
587 views

Why does increasing the number of bootstrapped cases make PLS coefficients significant?

I am running a PLS model with a low number of observations ($n=50$). While several pieces of academic work argue that this sample size is appropriate to run this type of model, I am quite confused ...
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654 views

What are guidelines for SmartPLS boostrapping case size?

In SmartPLS, bootstrapping is used to generate the t statistic from which statistical significance can be judged. The two main bootstrapping parameters are case and sample size. Increasing the sample ...
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1answer
175 views

What's the best way to choose data for Crossvalidation on linear regression settings (PCA, PLS)

We are extracting features from EEG, which is a time dependent signal. We have signals of 10,000 datapoints over 64 channels, and we extract 10 features per timestamp per channel, so at the end we ...
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1answer
74 views

How do you determine the effect of a simple predictor variable after a PLS analysis?

So, I am running PLS on a genetic dataset with phenotypic and genotypic information. I have about 1000 binary predictors (X), representing molecular markers, for each individual. My indicator ...
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102 views

How do you predict the value of new instance, when the training data were normalized?

I estimated a Partial Least Squares model where the X matrix had normalized columns. Now I want to predict the value for a new instance (which is a frequency vector summing to one.) I assume that if I ...
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1answer
141 views

Under what conditions can a PLS regression model be expressed by single linear equation?

I am confused by two, yet inconsistent for me, facts: Since the PLS regression is expressed by matrices of scores and loadings as $$X=TP^T+E\\Y=UQ^T+F$$ how it can be translated into linear equation ...
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235 views

Dimension reduction technique [closed]

As i know, PCA and PLS are two famous methods of dimension reduction Could you please name for other (neural network is it useful)?
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1answer
367 views

How to fit data with nonlinear partial least squares in R?

I am looking for a way to do nonlinear partial least squares in R or matlab. I thought kernel pls was a way to do it but it is not directly related to nonlinear pls. Do I have to calculate my own ...
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1answer
637 views

Combining principal component analysis and partial least squares

I know PCA and PLS are considered as alternative method to each other. But I am thinking about a kind of combination of the two in case of lots of predictors with little variability. In that case, ...
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1answer
352 views

how to find a linear combination of predictors maximizing correlation between its score and dependent variable in R

Please correct me if I am wrong as I am not good at R. I think I can find a linear combination maximizing correlation between predictors and dependent variables by running partial least squares ...
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104 views

PLS regression is not working on weighted data

I was running PLS regression on the data which is weighted and gives the following error message: ...
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1answer
4k views

PLS in R with the pls package

I am very new in PLS and I try to understand the output of the R function plsr(). Let us simulate data and run the PLS: ...
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1answer
1k views

PCA, LDA, CCA, and PLS

How are PCA, LDA, CCA, and PLS related? They all seem "spectral" and linear algebraic and very well understood (say 50+ years of theory built around them). They are used for very different things PCA: ...
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1answer
514 views

Measuring predictive accuracy for multiple dependent variables

In machine learning and in statistics there exist plenty of measures which estimate the performance of a predictive model. For example, classification accuracy, area under ROC curve ... for ...
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274 views

What, if any, dissimilarity is preserved in partial least squares (PLS)?

When we perform a principal components analysis (PCA) on a multivariate data set we are interested in finding orthogonal components that explain maximal variance in the data set. We can form a biplot ...
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2answers
1k views

How to compute the confidence intervals on regression coefficients in PLS?

The underlying model of PLS is that a given $n \times m$ matrix $X$ and $n$ vector $y$ are related by $$X = T P' + E,$$ $$y = T q' + f,$$ where $T$ is a latent $n \times k$ matrix, and $E, ...