Partial Least Squares (PLS) is a class of linear methods for modeling the relationship between two groups of variables (X and Y). It includes regression methods, where X are independent variables and Y are dependent, as well as modeling methods that treat X and Y symmetrically. All PLS methods ...

learn more… | top users | synonyms

0
votes
1answer
21 views

Heteroscedasticity in machine learning predictions

I am using a machine learning method (PLS) to predict a continuous variable, which currently does a pretty good job, with reasonable RMSE etc. However, the residuals exhibit heteroscedasticity, where ...
0
votes
0answers
21 views

Partial Least Squares regression

Assume we have a simple linear regression model expressed as $Y= X \beta + e$, where $Y$ is a vector of size $n \times 1$, $X$ is a matrix of size $ n \times p$, $\beta$ is the regression coefficients ...
1
vote
0answers
20 views

PLS with more variables than data points

Does it make sense to run partial least squares (PLS) on a data set that has many more columns (variables) than it has rows (data points)? I am using plsr in R. I ...
0
votes
1answer
39 views

Using predict with PCR in R [closed]

I'm trying to follow the documentation on the pcr method in R So I do the following ...
0
votes
0answers
25 views

When do all PLS components together explain only part of the variance of the original data?

According to this question and answer, the sum of variances of all partial least squares (PLS) components is normally less than 100%: Why do all the PLS components together explain only a part of the ...
2
votes
1answer
45 views

When there is only one dependent variable, is partial least squares regression the same as principal component regression?

When there is only one response (dependent) variable, what is the advantage of partial least squares (PLS) regression over principal component regression (PCR)? My understanding is that PLS is only ...
0
votes
1answer
40 views

What does 'iteration limit reached without convergence' mean in SAS Proc PLS

I receive the warning 'iteration limit reached without convergence' when using PROC PLS in SAS. What does this warning mean? I have 1,540 observations, 900 dependent variables and 600 independent ...
0
votes
0answers
22 views

Measurement model of my data is perfect but Structure model very poor? why?

First order reflective Measurement model is perfect on all psychomterics (AVE, CR,), but when it comes to structural paths majority of them are insignificant,AND EVEN r^2 is below .50 why so?
1
vote
2answers
35 views

PLS identify only peaks not troughs, and ignore certain region

I recorded a few Raman spectra for varying concentration of a substance. I processed the data in R and these are my steps: Remove baseline using baseline.corr with lambda=1e3 and p=0.01 Run PLSR on ...
0
votes
1answer
18 views

How to analyze generated components from partial least squares in SAS

I am using PROC PLS in SAS with multiple independent variables and multiple dependent variables. I would like to know how my independent variables are contributing to the scores for the first couple ...
0
votes
0answers
29 views

Correlation is moderate but Path coefficients (in pls-sem) show insignificant results

I am performing PLS-SEM analysis (usng plspm package), the outer loading's are significant as CI do not include zero on any of them However, large number of path coefficient's (i.e, inner model)are ...
0
votes
0answers
36 views

How to analyze this graph of partial least square regression?

I performed partial least square regression using pls package in R using modified birthwt package of MASS. The variables low and ...
2
votes
0answers
31 views

How to choose between different options in partial least square regression?

There seem to be several methods of performing partial least square regression. For example in pls pacakge in R, following are available: ...
0
votes
0answers
13 views

CV ANOVA validation of model PLS

This is the permutation 999 times for Partial least square analysis. What is the mean of R squared and Q square in the right top corner. how to interpret this picture? Thanks
4
votes
1answer
125 views

Why do all the PLS components together explain only a part of the variance of the original data?

I have a dataset consisting of 10 variables. I ran partial least squares (PLS) to predict a single response variable by these 10 variables, extracted 10 PLS components, and then computed the variance ...
0
votes
1answer
27 views

Principal component/Partial least-squares regression: can we use test data to calculate the factors?

I would like to make a PC/PLS regression and assess the resulting model's predictive power. The strategy is the classical splitting into training/validation/test sets, and using training/validation ...
0
votes
0answers
16 views

Finding class determination from PLS-DA/PCA

So I'm using PLS-DA via Metaboanalyst. I have two outcome classes (controls vs affected) and using the output of metaboanalyst (coefficient, loading, score, and VIP), am trying to find an "equation" ...
2
votes
1answer
41 views

linear path models vs. pls path models (structural equation models)

Assume we have the following linear path model: Structural (inner) model: $Y_{1} = \beta_{1}Y_{2}+\theta_{1}\delta$ Measurement (outer) model: $X_{1} = \lambda_{1}*Y_{1}+\epsilon_{1}\delta$ ...
0
votes
0answers
361 views

Calculate PLS Xscores for predicting new data

I wish to extract Partial Least Squares (PLS) components to apply non-linear regression (Gaussian Process Regression (GPR)) on the scores of the predictors (Xscores). The reason is my data is very ...
2
votes
1answer
73 views

Why is the weight vector in PLS constrained to be of unit length?

In the SIMPLS formulation of partial least squares (PLS) regression, the weights are constrained to have length of 1, $$r_a^Tr_a = 1,$$ where $a$ represents a latent component (from $1$ to $A$). This ...
0
votes
0answers
62 views

How does partial least square deal with collinearity?

I have little knowledge about statistics and PLS. Can I answer the question as below? The PLS model is linear, but the coefficients in the model are found in a different way. The principle is that ...
0
votes
1answer
106 views

Interaction term and partial least square regression

I am investigating the association of air pollution with birth weight. Given that there is collinearity between air pollutants, I chose to use PLS regression. To my understanding, we could use ...
1
vote
1answer
137 views

PLS PM: Multiplying outer loadings with inner path coefficients?

I'm referring to a method called PLS PM: http://cran.r-project.org/web/packages/semPLS/vignettes/semPLS-intro.pdf http://gastonsanchez.com/PLS_Path_Modeling_with_R.pdf Not going into detail, I just ...
0
votes
0answers
28 views

Mediation correlation

I have the following scenario in my research: In an open source software setting, we want to prove that when a project includes a lot of contributors who have collaborated before, then the project is ...
11
votes
2answers
486 views

What is the “partial” in partial least squares methods?

In partial least squares regression (PLSR) or partial least squares structural equation modelling (PLS-SEM), what does the term "partial" refer to?
1
vote
1answer
29 views

Partial least squares for expression datasets

I'm quite new to the applications of partial least squares regression analysis, and was hoping I could get an overview of how this analysis can be applied to the datasets I have. I have two datasets: ...
1
vote
0answers
60 views

Best method of analysis for negatively skewed longitudinal environmental data?

I have a dataset composed of a dependent variable (species percent cover) and a range of abiotic variables (salinity, temperature, pH, water movement etc). It is a longitudinal study, in which species ...
1
vote
0answers
23 views

Individual factor significance in multilevel sPLS-DA

I recently was asked by reviewers to "include p-values" with my multilevel sparse partial least squares analysis. In brief, I have a nested design with two factors, say treatment and sampling region. ...
0
votes
0answers
67 views

SEM vs. Hierarchical Regression

I am comparing the outcomes of my model analysis using PLS and hierarchical regression (HR). On SPSS (for HR), I'm using (mean or summative) scores. On Smart-PLS, when I enter my variables as computed ...
0
votes
0answers
54 views

Partial least squares structural equation modeling: simulate dataset based on a given model

Is there any R package or other software, with which one can generate a dataset based on a given pls structural equation model? For covariance based structural equation modeling I found the simsem ...
0
votes
0answers
93 views

How to calculate correlation between items (indicators) in formative construct in SmartPLS?

I want to ask how I could calculate the correlation between the items (indicators) in formative construct (latent variable) in SmartPLS as it is one of the requirement. Thank you
0
votes
0answers
30 views

Difference between loadings and betas in PLS algorithm

Section 4.4 of this paper talks about the R package that computes PLS regression. I am confused with regards to the difference between the loadings and the ...
0
votes
0answers
57 views

Is the approach for PLSDA for categorical variables the same as that used for “PLS for regression”?

I understand the approach used for partial least squares for regression (PLS) where the principal components are chosen such that the correlation between the scores in the principal component space ...
1
vote
0answers
34 views

Include confounder into partial least squares regression

I am wondering, when using partial least squares regression to investigate a research question, there is predictor component (T) and response component (U), if I want to adjust for confounders (C), do ...
1
vote
0answers
151 views

Multivariate outlier detection for PLS model

I am working with a PLS model (library pls) in R, where I am developing calibration models for NIRS data. I have been using other commercial software before that allowed me to detect outliers based on ...
0
votes
0answers
103 views

extract fitted outcome in PLS-DA (R package “mixOmics”)

Hi, I am a struggling new user of the R package mixOmics, and I just recently learned about PLS-DA. I wish to be able to run PLS-DA on a binary outcome and extract the predicted outcome, tabulate it ...
0
votes
0answers
58 views

Partial least squares regression on survey data with multiple scales

I have a survey data set composed of 7 scales, each scale with 7 to 10 items. The theoretical framework I've devised uses 5 of the scales as independent variables and 2 of the scales as dependent ...
0
votes
0answers
42 views

How to compare plsr-selected components (generated from separate regression formulas)?

I would like to identify the subset of landscape variables from one distance class (within a series of different distance classes) which are the best predictors of 'noncol' abundance. There are many ...
0
votes
0answers
41 views

Regularization vs PLS for highly colinear data?

When dealing with colinear data, when would I want to use L1/L2 regularization, and when would I want to use Partial Least Squares? Are there any theoretical or practical reasons to prefer one over ...
0
votes
0answers
14 views

regression test or two bloc PLS model to prove a gene expression matrix relationship

I have two gene expression matrices, matrix A coming from a set of two hypothetically different cells while matrix B is coming (for certain) from only one of them. The structure of a gene expression ...
2
votes
1answer
96 views

Calculate the variance explained in matrix Y by matrix X

I have two matrices corresponding to the same set of $n$ samples, with $j$ and $k$ variables, respectively ($j > 10000$, $k > 10000$). $X$ is an $n \times j$ matrix and $Y$ is an $n \times k$ ...
2
votes
1answer
781 views

Does it make sense to calculate Q2 and R2 values on PLS-DA models?

Since PLS-DA is a computational technique which deals with outcomes expressed as a categorical variable (e.g. "Yellow","Brown","Black","Green") I cannot understand how it is possible to calculate Q2 ...
7
votes
1answer
1k views

Regression in $p>n$ setting: how to choose regularization method (Lasso, PLS, PCR, ridge)?

I am trying see whether to go for ridge regression, LASSO, principal component regression (PCR), or Partial Least Squares (PLS) in a situation where there are large number of variables / features ...
0
votes
0answers
82 views

PLS regression analysis based on Likert scale

Can dependent variable for PLS be based on Likert scale? As i understand, dependent variable needs to be continuous. I wish to multiply frequency (i.e. integer value 3) with rating coming from ...
0
votes
1answer
453 views

Partial least squares regression for categorical factor in R

I adjust the partial least squares regression for one categorical factor (2 levels – be or nottobe) with with the ...
0
votes
2answers
209 views

Partial Least Squares structural equation modeling

Im calculating a Structural Equation model with Partial Least Squares (with R). Lets say a simple example: two Response values (R1, R2) are combined to a latent variable RespLV = weight1*R1 + ...
1
vote
0answers
125 views

Quality of PLS Regression at different interaction levels

I am fairly new to multivariate statistics and have run into the following situation: I have a data set of 12 response sets based on a Likert scale (1-5), data which is commonly (in social research) ...
0
votes
0answers
151 views

Calculating influence for PLS with outer loadings and beta coefficient of latent variable

I'm calculating a penalized least squares regression (PLS). Two influence variables are connected to a latent variable. This latent variable has an influence (beta coefficient) of 0.6 on the response ...
3
votes
1answer
5k views

What is the difference between “loadings” and “correlation loadings” in PCA and PLS?

One common thing to do when doing Principal Component Analysis (PCA) is to plot two loadings against each other to investigate the relationships between the variables. In the paper accompanying the ...
0
votes
0answers
41 views

Variable Construct (Dimension) Insertion (Representation) in SmartPLS

I have a question please. I am working on SmartPLS. The question is regarding variable construct representation. Any variable could have construct including dimensions. For example, the ...