Partial Least Squares

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PLS PM: Multiplying outer loadings with inner path coefficients?

I'm referring to a method called PLS PM: http://cran.r-project.org/web/packages/semPLS/vignettes/semPLS-intro.pdf http://gastonsanchez.com/PLS_Path_Modeling_with_R.pdf Not going into detail, I just ...
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14 views

Mediation correlation

I have the following scenario in my research: In an open source software setting, we want to prove that when a project includes a lot of contributors who have collaborated before, then the project is ...
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263 views

What is the “partial” in partial least squares methods?

In partial least squares regression (PLSR) or partial least squares structural equation modelling (PLS-SEM), what does the term "partial" refer to?
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6 views

Partial least squares for expression datasets

I'm quite new to the applications of partial least squares regression analysis, and was hoping I could get an overview of how this analysis can be applied to the datasets I have. I have two datasets: ...
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27 views

Best method of analysis for negatively skewed longitudinal environmental data?

I have a dataset composed of a dependent variable (species percent cover) and a range of abiotic variables (salinity, temperature, pH, water movement etc). It is a longitudinal study, in which species ...
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9 views

Individual factor significance in multilevel sPLS-DA

I recently was asked by reviewers to "include p-values" with my multilevel sparse partial least squares analysis. In brief, I have a nested design with two factors, say treatment and sampling region. ...
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30 views

SEM vs. Hierarchical Regression

I am comparing the outcomes of my model analysis using PLS and hierarchical regression (HR). On SPSS (for HR), I'm using (mean or summative) scores. On Smart-PLS, when I enter my variables as computed ...
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18 views

Partial least squares structural equation modeling: simulate dataset based on a given model

Is there any R package or other software, with which one can generate a dataset based on a given pls structural equation model? For covariance based structural equation modeling I found the simsem ...
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30 views

How to calculate correlation between items (indicators) in formative construct in SmartPLS?

I want to ask how I could calculate the correlation between the items (indicators) in formative construct (latent variable) in SmartPLS as it is one of the requirement. Thank you
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14 views

Difference between loadings and betas in PLS algorithm

Section 4.4 of this paper talks about the R package that computes PLS regression. I am confused with regards to the difference between the loadings and the ...
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30 views

Is the approach for PLSDA for categorical variables the same as that used for “PLS for regression”?

I understand the approach used for partial least squares for regression (PLS) where the principal components are chosen such that the correlation between the scores in the principal component space ...
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22 views

Include confounder into partial least squares regression

I am wondering, when using partial least squares regression to investigate a research question, there is predictor component (T) and response component (U), if I want to adjust for confounders (C), do ...
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82 views

Multivariate outlier detection for PLS model

I am working with a PLS model (library pls) in R, where I am developing calibration models for NIRS data. I have been using other commercial software before that allowed me to detect outliers based on ...
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44 views

extract fitted outcome in PLS-DA (R package “mixOmics”)

Hi, I am a struggling new user of the R package mixOmics, and I just recently learned about PLS-DA. I wish to be able to run PLS-DA on a binary outcome and extract the predicted outcome, tabulate it ...
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35 views

Partial least squares regression on survey data with multiple scales

I have a survey data set composed of 7 scales, each scale with 7 to 10 items. The theoretical framework I've devised uses 5 of the scales as independent variables and 2 of the scales as dependent ...
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1answer
31 views

b-coefficient numerical value from pls r package

Has any body encountered a problem finding numerical values of b-coefficients while developing partial least squares regression model from spectroscopic data using ...
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26 views

Regularization vs PLS for highly colinear data?

When dealing with colinear data, when would I want to use L1/L2 regularization, and when would I want to use Partial Least Squares? Are there any theoretical or practical reasons to prefer one over ...
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12 views

regression test or two bloc PLS model to prove a gene expression matrix relationship

I have two gene expression matrices, matrix A coming from a set of two hypothetically different cells while matrix B is coming (for certain) from only one of them. The structure of a gene expression ...
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49 views

Calculate the variance explained in matrix Y by matrix X

I have two matrices corresponding to the same set of $n$ samples, with $j$ and $k$ variables, respectively ($j > 10000$, $k > 10000$). $X$ is an $n \times j$ matrix and $Y$ is an $n \times k$ ...
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342 views

Does it make sense to calculate Q2 and R2 values on PLS-DA models?

Since PLS-DA is a computational technique which deals with outcomes expressed as a categorical variable (e.g. "Yellow","Brown","Black","Green") I cannot understand how it is possible to calculate Q2 ...
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30 views

interpret the PLS regression

I'm giving you a bit of background before asking my question. I've done a univariate PLS regression where I came out with many models. My boss asked to interpret the PLS regression for the best ...
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1answer
544 views

Regression in $p>n$ setting: how to choose regularization method (Lasso, PLS, PCR, ridge)?

I am trying see whether to go for ridge regression, LASSO, principal component regression (PCR), or Partial Least Squares (PLS) in a situation where there are large number of variables / features ...
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43 views

PLS regression analysis based on Likert scale

Can dependent variable for PLS be based on Likert scale? As i understand, dependent variable needs to be continuous. I wish to multiply frequency (i.e. integer value 3) with rating coming from ...
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79 views

How can i show mathematically Partial Least Square Regression is better than other Ordinary Least Square Regression?

I want to develop techniques for attribute selection (important independent variable X) using Partial least square 2 regression(PLS2R) for a large data sets .Initially i tried using multivariate ...
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234 views

Partial least squares regression for categorical factor in R

I adjust the partial least squares regression for one categorical factor (2 levels – be or nottobe) with with the ...
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119 views

Partial Least Squares structural equation modeling

Im calculating a Structural Equation model with Partial Least Squares (with R). Lets say a simple example: two Response values (R1, R2) are combined to a latent variable RespLV = weight1*R1 + ...
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83 views

Quality of PLS Regression at different interaction levels

I am fairly new to multivariate statistics and have run into the following situation: I have a data set of 12 response sets based on a Likert scale (1-5), data which is commonly (in social research) ...
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89 views

Calculating influence for PLS with outer loadings and beta coefficient of latent variable

I'm calculating a penalized least squares regression (PLS). Two influence variables are connected to a latent variable. This latent variable has an influence (beta coefficient) of 0.6 on the response ...
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1answer
2k views

What is the difference between “loadings” and “correlation loadings” in PCA and PLS?

One common thing to do when doing Principal Component Analysis (PCA) is to plot two loadings against each other to investigate the relationships between the variables. In the paper accompanying the ...
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30 views

Variable Construct (Dimension) Insertion (Representation) in SmartPLS

I have a question please. I am working on SmartPLS. The question is regarding variable construct representation. Any variable could have construct including dimensions. For example, the ...
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76 views

Do significant control variables need to be eliminated from statistical analysis in general and SmartPLS specificly?

I have been told that we need to eliminate control factors that shows a significant impact on the dependent variable from the model. As I know that control variables are variables that have testified ...
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168 views

Model assumptions of partial least squares (PLS)

I am trying to find information regarding the assumptions of PLS regression (single Y). I am especially interested in a comparison of the assumptions of PLS with regards to those of OLS regression. ...
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1answer
149 views

How many components to use when doing a PLS regression?

I'm doing a PLS regression with SAS. My man-a asked me to do find the numbers of principal components for the dataset I'm working with through SAS. As I've never done that before, I'm confused on how ...
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132 views

Top R package for PLS regression? [closed]

I'm very new to R and PLS-regression. I would like to know, based on your experience, which R packages for PLS-regression are most highly recommended. My area of application is chemistry.
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73 views

step by step analysis for GDP forecast with PLS and SAS

I'm currently trying to do a forecast of GDP , although I'm new to the econometric field , with SAS and the Partial Least Square method. My question is the following: Does anyone have any articles ...
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84 views

PLS Regression and collinearity

From what i know PLS regression is used when there is more variables than observations and when there exist multicollinearity between the independent variables. I have data for a regression model that ...
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28 views

Joint k-linear regressions

I would like to learn simultaneously $k$ linear maps $\{\phi_0, \dots ,\phi_{k-1} \}$ at the same time: $min \sum_{i=0}^{k-1} \sum_{j=i+1}^{k-1}||X_i \phi_i - X_j \phi_j||_2^{2}$, such that ...
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Is it possible to combine bayesian SEM with PLS SEM?

I have already read some books about both two structural equation models. It seems both SEMs are suitable to the situation with small observations and large variables. I assume to use combine both ...
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12 views

Loadings shoot up in last few components in Partial Least Squares

I'm trying out the partial least squares method of applying regression to a set of highly collinear predictor variables. When using the pls r package, I noticed ...
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153 views

Explaining PLS-DA to a layman

I recently learned about PLS-DA in a statistics class. I am able to perform PLS-DA mathematically, but I am having trouble really explaining it. I was wondering if anyone could help me with how to ...
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1k views

PCA and PLS: testing variables for significance

I'm trying to understand the process for statistical testing for principal component analysis or partial least squares. Step 1. PCA: I feel that I have a not-terrible understanding of PCA: You find ...
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242 views

STATISTICA 12 for SEM data analysis [closed]

I'm a graduate student pursuing Ph.D. in Information Systems. My dissertation research involves using structural equation modeling (SEM-PLS) as a main data analysis method. After comparing various ...
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165 views

Testing significant difference between two determination coefficients $R^{2}$ for two PLS-based structural equation models

Two structural equation models were tested (one was based on a sample with 199 individuals and the second one on a sample with 93 individuals). The aim was to test whether the results of the first ...
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1answer
635 views

Choosing number of components in PLS - without minimum in RMSEP

I use the plsr formula in R and the oscorespls algoritm for analysing my datasets. The datasets are characterized by relatively few number of observations (22), one ...
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2answers
175 views

What variable importance criterion?

A student of mine developed a heuristic supervised machine learning algorithm for highly multivariate data. It seems to work pretty well, and once the model has been derived from the training data ...
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1answer
479 views

PLS-DA with binary predictors in R (package mixOmics)

I am trying to analyse a dataset with at minimum 50 explanatory variables coded as 0 and 1 for presence/absence and a binary response variable (case/control). The goal is to see how the variables can ...
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1answer
870 views

Why does increasing the number of bootstrapped cases make PLS coefficients significant?

I am running a PLS model with a low number of observations ($n=50$). While several pieces of academic work argue that this sample size is appropriate to run this type of model, I am quite confused ...
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969 views

What are guidelines for SmartPLS boostrapping case size?

In SmartPLS, bootstrapping is used to generate the t statistic from which statistical significance can be judged. The two main bootstrapping parameters are case and sample size. Increasing the sample ...
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198 views

What's the best way to choose data for Crossvalidation on linear regression settings (PCA, PLS)

We are extracting features from EEG, which is a time dependent signal. We have signals of 10,000 datapoints over 64 channels, and we extract 10 features per timestamp per channel, so at the end we ...
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81 views

How do you determine the effect of a simple predictor variable after a PLS analysis?

So, I am running PLS on a genetic dataset with phenotypic and genotypic information. I have about 1000 binary predictors (X), representing molecular markers, for each individual. My indicator ...