Partial Least Squares (PLS) is a class of linear methods for modeling the relationship between two groups of variables, X and Y. Includes PLS regression.

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Partial Least Square regression in mixed models?

As a graduate student, I am glad to have so many cool things online to teach myself. To learn about PLS, I liked the materials provided G. Sanchez (e.g., ...
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Variable selection using cross-validated PLS model when permutation test shows lack of significance

I understand that the permutation test on PLS can help to detect overfitting of the PLS model. Usually if the p-value is greater than a criterion, say 0.05, it means that the model is overfitting and ...
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147 views

How to use PCA in regression?

I'm currently reading in the Applied Predictive Modeling book about PCA for dimensionality reduction. I've read the following: If the predictive relationship between the predictors and response is ...
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Use observation-weighted optimisation metric in PLS machine learning

I would like to build a model that trains a PLS algorithm to minimise a weighted sum of square errors (where the weights are proportional to the magnitude of the true y observation). The reason for ...
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29 views

Rotation in (Univariate) Partial Least Squares Regression

according to a not so recent paper (http://www.sciencedirect.com/science/article/pii/S0167947303003049), it is a good idea to Varimax-rotate the factors that have emerged by Partial Least Squares. ...
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PLS using a kernel matrix

I would like to use a kernel matrix generated with a custom kernel function to fit a PLS-DA model (I am thinking of caret's PLS-DA at the moment), with only one binary response variable in the Y ...
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30 views

Examining PLS Results in R

I would like to know how I can go about examining the results of a partial least squares regression. Specifically, I am interested to know what the coefficient is for each component, and what the ...
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90 views

Problems with implementing cross-validation for OLS, PLSR and PCR

I am new to regression methods. I am creating Multiple Linear Regression, Partial Least Squares Regression and Principal Component Regression models for my dataset, and I am a bit confused with the ...
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How to pre-process data for partial least square PLS regression in R?

I have a data frame that is consisted of 20 observations and 35 variables. I want to prepare the data for partial least square regression PLS in R. Many authors suggest: 1)Check whether the ...
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Theory behind partial least squares regression

Can anyone recommend a good exposition of the theory behind partial least squares regression (available online) for someone who understands SVD and PCA? I have looked at many sources online and have ...
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59 views

How to pick the best model with cross validation?

Based on my understanding the leave one out cross validation is to hold a sample out as the test set and fit a model with remaining data and then calculate the error of prediction of the test sample ...
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56 views

Dichotomous Variables Problem

I'm currently in the process of making research about Investments. And I bumped with a problem of using variables in PLS. So would very much appreciate your advises, because I am in a dead-end for ...
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Can we apply PLSR with only a few variables?

I have 110 samples for predicting a dependent variable based on 16 independent variables: Analysed corrlation martrix and removed all the variables that were not correlated with the dependet ...
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41 views

Combining PCR/PLSR components with some other predictors in one regression model

I am investigating the value of adding regressors to a base model ('restricted model') by applying different transformation methods to the additional regressors. My restricted model can be denoted as ...
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42 views

Heteroscedasticity in machine learning predictions

I am using a machine learning method (PLS) to predict a continuous variable, which currently does a pretty good job, with reasonable RMSE etc. However, the residuals exhibit heteroscedasticity, where ...
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60 views

What is partial least squares (PLS) regression and how is it different from OLS? [duplicate]

Assume we have a simple linear regression model expressed as $$y= X \beta + \epsilon,$$ where $y$ is a vector of size $n \times 1$, $X$ is a matrix of size $ n \times p$, $\beta$ is the regression ...
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33 views

PLS with more variables than data points

Does it make sense to run partial least squares (PLS) on a data set that has many more columns (variables) than it has rows (data points)? I am using plsr in R. I ...
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224 views

Using predict with PCR in R [closed]

I'm trying to follow the documentation on the pcr method in R So I do the following ...
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40 views

When do all PLS components together explain only part of the variance of the original data?

According to this question and answer, the sum of variances of all partial least squares (PLS) components is normally less than 100%: Why do all the PLS components together explain only a part of the ...
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112 views

When there is only one dependent variable, is partial least squares regression the same as principal component regression?

When there is only one response (dependent) variable, what is the advantage of partial least squares (PLS) regression over principal component regression (PCR)? My understanding is that PLS is only ...
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158 views

What does 'iteration limit reached without convergence' mean in SAS Proc PLS

I receive the warning 'iteration limit reached without convergence' when using PROC PLS in SAS. What does this warning mean? I have 1,540 observations, 900 dependent variables and 600 independent ...
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Measurement model of my data is perfect but Structure model very poor? why?

First order reflective Measurement model is perfect on all psychomterics (AVE, CR,), but when it comes to structural paths majority of them are insignificant,AND EVEN r^2 is below .50 why so?
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PLS identify only peaks not troughs, and ignore certain region

I recorded a few Raman spectra for varying concentration of a substance. I processed the data in R and these are my steps: Remove baseline using baseline.corr with lambda=1e3 and p=0.01 Run PLSR on ...
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23 views

How to analyze generated components from partial least squares in SAS

I am using PROC PLS in SAS with multiple independent variables and multiple dependent variables. I would like to know how my independent variables are contributing to the scores for the first couple ...
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87 views

Correlation is moderate but Path coefficients (in pls-sem) show insignificant results

I am performing PLS-SEM analysis (usng plspm package), the outer loading's are significant as CI do not include zero on any of them However, large number of path coefficient's (i.e, inner model)are ...
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47 views

How to analyze this graph of partial least square regression?

I performed partial least square regression using pls package in R using modified birthwt package of MASS. The variables low and ...
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How to choose between different options in partial least square regression?

There seem to be several methods of performing partial least square regression. For example in pls pacakge in R, following are available: ...
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51 views

CV ANOVA validation of model PLS

This is the permutation 999 times for Partial least square analysis. What is the mean of R squared and Q square in the right top corner. how to interpret this picture? Thanks
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234 views

Why do all the PLS components together explain only a part of the variance of the original data?

I have a dataset consisting of 10 variables. I ran partial least squares (PLS) to predict a single response variable by these 10 variables, extracted 10 PLS components, and then computed the variance ...
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63 views

Principal component/Partial least-squares regression: can we use test data to calculate the factors?

I would like to make a PC/PLS regression and assess the resulting model's predictive power. The strategy is the classical splitting into training/validation/test sets, and using training/validation ...
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23 views

Finding class determination from PLS-DA/PCA

So I'm using PLS-DA via Metaboanalyst. I have two outcome classes (controls vs affected) and using the output of metaboanalyst (coefficient, loading, score, and VIP), am trying to find an "equation" ...
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60 views

linear path models vs. pls path models (structural equation models)

Assume we have the following linear path model: Structural (inner) model: $Y_{1} = \beta_{1}Y_{2}+\theta_{1}\delta$ Measurement (outer) model: $X_{1} = \lambda_{1}*Y_{1}+\epsilon_{1}\delta$ ...
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550 views

Calculate PLS Xscores for predicting new data

I wish to extract Partial Least Squares (PLS) components to apply non-linear regression (Gaussian Process Regression (GPR)) on the scores of the predictors (Xscores). The reason is my data is very ...
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111 views

Why is the weight vector in PLS constrained to be of unit length?

In the SIMPLS formulation of partial least squares (PLS) regression, the weights are constrained to have length of 1, $$r_a^Tr_a = 1,$$ where $a$ represents a latent component (from $1$ to $A$). This ...
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85 views

How does partial least square deal with collinearity?

I have little knowledge about statistics and PLS. Can I answer the question as below? The PLS model is linear, but the coefficients in the model are found in a different way. The principle is that ...
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174 views

Interaction term and partial least square regression

I am investigating the association of air pollution with birth weight. Given that there is collinearity between air pollutants, I chose to use PLS regression. To my understanding, we could use ...
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235 views

PLS PM: Multiplying outer loadings with inner path coefficients?

I'm referring to a method called PLS PM: http://cran.r-project.org/web/packages/semPLS/vignettes/semPLS-intro.pdf http://gastonsanchez.com/PLS_Path_Modeling_with_R.pdf Not going into detail, I just ...
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Mediation correlation

I have the following scenario in my research: In an open source software setting, we want to prove that when a project includes a lot of contributors who have collaborated before, then the project is ...
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661 views

What is the “partial” in partial least squares methods?

In partial least squares regression (PLSR) or partial least squares structural equation modelling (PLS-SEM), what does the term "partial" refer to?
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51 views

Partial least squares for expression datasets

I'm quite new to the applications of partial least squares regression analysis, and was hoping I could get an overview of how this analysis can be applied to the datasets I have. I have two datasets: ...
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91 views

Best method of analysis for negatively skewed longitudinal environmental data?

I have a dataset composed of a dependent variable (species percent cover) and a range of abiotic variables (salinity, temperature, pH, water movement etc). It is a longitudinal study, in which species ...
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Individual factor significance in multilevel sPLS-DA

I recently was asked by reviewers to "include p-values" with my multilevel sparse partial least squares analysis. In brief, I have a nested design with two factors, say treatment and sampling region. ...
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92 views

SEM vs. Hierarchical Regression

I am comparing the outcomes of my model analysis using PLS and hierarchical regression (HR). On SPSS (for HR), I'm using (mean or summative) scores. On Smart-PLS, when I enter my variables as computed ...
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133 views

Is the PLS-DA approach for categorical variables the same as that used for PLS regression?

I understand the approach used for partial least squares for regression (PLS regression) where the PLS components are chosen such that the correlation between the scores of the PLS components of the ...
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37 views

Include confounder into partial least squares regression

I am wondering, when using partial least squares regression to investigate a research question, there is predictor component (T) and response component (U), if I want to adjust for confounders (C), do ...
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204 views

Multivariate outlier detection for PLS model

I am working with a PLS model (library pls) in R, where I am developing calibration models for NIRS data. I have been using other commercial software before that allowed me to detect outliers based on ...
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1answer
158 views

Calculate the variance explained in matrix Y by matrix X

I have two matrices corresponding to the same set of $n$ samples, with $j$ and $k$ variables, respectively ($j > 10000$, $k > 10000$). $X$ is an $n \times j$ matrix and $Y$ is an $n \times k$ ...
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Does it make sense to calculate Q2 and R2 values on PLS-DA models?

Since PLS-DA is a computational technique which deals with outcomes expressed as a categorical variable (e.g. "Yellow","Brown","Black","Green") I cannot understand how it is possible to calculate Q2 ...
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Regression in $p>n$ setting: how to choose regularization method (Lasso, PLS, PCR, ridge)?

I am trying see whether to go for ridge regression, LASSO, principal component regression (PCR), or Partial Least Squares (PLS) in a situation where there are large number of variables / features ...
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PLS regression analysis based on Likert scale

Can dependent variable for PLS be based on Likert scale? As i understand, dependent variable needs to be continuous. I wish to multiply frequency (i.e. integer value 3) with rating coming from ...