\begin{align}
y &= \Phi(x_1,x_2,\rho)
= \int_{-\infty}^{x_1}\left[\int_{-\infty}^{x_2} \phi(a,b,\rho)\,\mathrm
db\right]\,\mathrm da\\
\frac{\partial y}{\partial x_1}
&= \frac{\partial}{\partial x_1}\Phi(x_1,x_2,\rho) = \frac{\partial}{\partial x_1}\int_{-\infty}^{x_1}
\left[\int_{-\infty}^{x_2} \phi(a,b,\rho)\,\mathrm db\right]\,\mathrm da\\
&= \int_{-\infty}^{x_2} \phi(x_1,b,\rho)\,\mathrm db
\end{align}
via the rule for differentiating under the integral sign. Similarly,
$$\frac{\partial y}{\partial x_2} = \int_{-\infty}^{x_1} \phi(a,x_2,\rho)\,\mathrm da.$$
If you don't recall the rule for differentiating integrals, see for
example, the comments following
this answer on math.SE.
The derivative with respect to $\rho$ is straightforward to find but
messy in its details. We have that
$$\phi(x_1,x_2,\rho)=\frac{1}{2\pi\sqrt{1-\rho^2}}
\exp\left[-\frac{x^2 -2\rho xy + y^2}{2(1-\rho^2)}\right]$$
whose partial derivative with respect to $\rho$ is left to the OP to find.
If $g(x_1,x_2,\rho)$ denotes this partial derivative, then
$$\frac{\partial}{\partial \rho}\Phi(x_1,x_2,\rho) = \frac{\partial}{\partial \rho}\int_{-\infty}^{x_1}
\left[\int_{-\infty}^{x_2} \phi(a,b,\rho)\,\mathrm db\right]\,\mathrm da
= \int_{-\infty}^{x_1}
\int_{-\infty}^{x_2} g(a,b,\rho)\,\mathrm db\,\mathrm da$$
I know how to do that from high school calculus. My question is how to do when we have cdf and pdf.
Ignore the information that these are pdfs or cdfs and proceed. The bivariate cdf will be given as a double integral with integrand the bivariate pdf and upper limits $x_1$ and $x_2$. So the partial derivative w.r.t. $x_i$ will be a single integral of the bivariate pdf, etc. $\endgroup$