I ask this question because Bowker test (McNemar extension for $k\times k$ tables with $k>2$) requires a large number of observations for fitting well and also requires (as a rule of thumb) that the difference between symmetric cells be $> 5$.

Currently I'm working with $5 \times 5$ tables (pre-post responses to Likert-scale questionnaire items). I would like to know if there were significant changes in the distribution of students answers and if so, verify if the responses were higher or lower in the Likert-scale in comparison of the first stage of the experiment.

Here I have a small number of observations (25 students) What kind of statistic test can I use to test table symmetry that meets my requirements?

  • 2
    $\begingroup$ Will, instead exact (exhausive permutation) test, a Monte Carlo (simulated permutation) test suit you? You could compute the chi-square statistic of the test for each of many permutations and then assess the alpha-level cut-off tail in its distrubution. $\endgroup$
    – ttnphns
    Aug 11 '15 at 9:45
  • 1
    $\begingroup$ library.wolfram.com/infocenter/MathSource/7634 is what you ask for. $\endgroup$
    – ttnphns
    Aug 11 '15 at 9:55
  • $\begingroup$ Hi @ttnphns I have already searched that source (Mathematica package) but: 1. I don't have that software, 2. I wanted to understand the algorithm implementation and e.g. coding it in R on my own, 3. The detail of the algorithm is referenced in a paper written in German (I don't speak German). So if you can figure out how they implemented that algorithm let me know please, thanks for your answers! $\endgroup$ Aug 11 '15 at 15:41
  • $\begingroup$ Unfortunately, I won't be able to help with that algo. $\endgroup$
    – ttnphns
    Aug 11 '15 at 17:00
  • 1
    $\begingroup$ How is the statistic defined? Is it this one: $Q_B=\sum\sum_{i<j} (n_{ij}-n_{ji})^2/(n_{ij}+n_{ji})$. If so, the paper by Krampe & Kuhnt (2007) "Bowker's test for symmetry and modifications within the algebraic framework", Comp.Stat.&Data Analysis, 51 (9), pp 4124–4142 (tech report version here) may be useful. $\endgroup$
    – Glen_b
    Aug 12 '15 at 7:12

I think this is going to work. Given a contingency table, the distribution of the off-diagonal elements $n_{ij},\,i \neq j$, conditional on the sum of the complementary off-diagonal cells, $N_{ij} = n_{ij} + n_{ji}$, can be written as the product of $K(K - 1)/2$ binominal random variables, that is

$$ P(\mathbf{n}) = \prod_{i < j} \binom{N_{ij}}{n_{ij}} \pi_{ij}^{n_{ij}} ( 1- \pi_{ij})^{n_{ij}},$$

where $\mathbf{n}$ is a vector with elements $n_{ij}$ and $\pi_{ij} = \mathbb{E}(n_{ij}/N_{ij}|N_{ij})$. Under the null hypothesis of complete symmetry, $\pi_{ij} = \pi_{ji} = 1/2$, and thus the permutation distribution is given by

$$ P_{0}(\mathbf{n}) = \prod_{i < j} \binom{N_{ij}}{n_{ij}} \left( \frac{1}{2}\right)^{N_{ij}}.$$

The exact significance test is performed by evaluating

$$ p = \sum_{k \in K} P_{0}(\mathbf{n}),$$

where $K = \{k : P_{0}(\mathbf{n}) < P(\mathbf{n})\}$.

The following R code should do the job.

bowker <- function(mat) {
  n <- dim(mat)[1]
  P_0 <- 1
  P <- 1
  p <- 0
  for (i in 1:(n-1)) {
    for (j in (i+1):n) {
      N <- mat[i,j] + mat[j,i]
      pi <- mat[i,j] / N
      P_0 <- P_0 * choose(N, mat[i,j]) * (1/2)^N
      P <- P * choose(N, mat[i,j]) * pi^mat[i,j] * (1 - pi)^mat[i,j]
      if (P > P_0) {p <- p + P_0}
  return(list(P_0 = P_0, P = P, p = p))

# asymmetric contingency table
mat_asym <- matrix(seq(1,5), ncol = 5, nrow = 5)

# symmetric contingency table
mat_sym <- matrix(2, ncol = 5, nrow = 5)

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