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I was reading the book Bayesian Methods for Hackers by Cameron Davidson-Pilon. He use PyMC for examples.

As an experiment, I created a PySpark App with the code example Inferring Behavior from Text-Message Data and I ran it on my computer with some network traffic as an standalone Spark cluster. It didn't take too long (382 ms for 27 MB of raw data). Now, I'm considering to scale this method to the full cluster and the hole data (24 MB per second).

So, my main concern is what do I have to consider for the implementation?

NOTE: In the book we can look at the following warning under A Note on Big Data

Paradoxically, big data's predictive analytic problems are actually solved by relatively simple algorithms [2][4]. Thus we can argue that big data's prediction difficulty does not lie in the algorithm used, but instead on the computational difficulties of storage and execution on big data. (One should also consider Gelman's quote from above and ask "Do I really have big data?" ).

The much more difficult analytic problems involve medium data and, especially troublesome, really small data. Using a similar argument as Gelman's above, if big data problems are big enough to be readily solved, then we should be more interested in the not-quite-big enough datasets.

I thought Davidson-Pilon's warning about using Bayesian methods with big data was a problem reflected in the performance, but it isn't. So, what do I have to take in consideration when I apply Bayesian methods to a big data problem?

(I reviewed the references and actually I think my situation qualifies as a medium data problem.)

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    $\begingroup$ Is this more of a question about how to implement something/use spark or is there a particular statistical question you have? If this more about programming you may have better luck getting a good answer if you ask this where it is likely to be seen by programmers familiar with Spark/Spark ml.lib $\endgroup$ – Kitter Catter May 25 '16 at 21:32
  • $\begingroup$ Thanks for your comment Kitter Catter. My main concern is about the implications about applying Bayesian methods to Big Data problems. I mention Spark because I'm working with it. $\endgroup$ – jocerfranquiz May 25 '16 at 21:39
  • $\begingroup$ @jocerfranquiz, can you clarify the statistical question you're asking? It still seems to me like this is more about the coding implementation. $\endgroup$ – gung - Reinstate Monica May 25 '16 at 22:08
  • $\begingroup$ @gung, sorry if is not clear. The author of the book wrote a warning about using Bayesian methods in big data problems. I thought that it was a problem reflected into the performance, but it isn't. So, what do I have to take in consideration when I apply Bayesian methods to a big data problem? $\endgroup$ – jocerfranquiz May 25 '16 at 22:29
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Author here. There are a few points I can elaborate on:

  1. Your data is going to be distributed across many computers in a real cluster, so each computer has a fraction of the data. Locally, then, the computations should run fine. But the question next is: how do you combine all these inferences? Sure you could just merge the traces from each computer, but then you haven't gained anything from having all this extra data.

  2. As the data increases, the posterior (typically) becomes more and more peaked and narrow, and the rest of the space is much flatter, which means the MCMC algorithm will have a hard time finding the location of the posterior (assume it starts far away). This really affects convergence.

  3. My note also applies to the number of unknown variables - with more variables, the space the posterior lives in higher and higher dimensions, so convergence of the MCMC is less guaranteed. Typically big data comes with more unknown variables.

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It looks like MLlib might have a Naive Bayes algorithm:

http://spark.apache.org/docs/latest/mllib-naive-bayes.html

It also looks like cloudera has an article on MCMC that you would find interesting. It uses PyMC which I believe Bayesian Methods for Hackers uses.

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    $\begingroup$ I looked at the Cloudera article and it's very complete. Thanks! $\endgroup$ – jocerfranquiz May 25 '16 at 21:45

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