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Short version: I have two time series: steps taken and change in body fat mass. Both are daily data. I am trying the estimate the effect of the number of steps taken on the change in body fat mass. I am especially interested in getting a point estimate and interval for for where the effect goes from positive to negative.

Loong version (including background, details, and methodological ramblings): A few months ago I was reading a bunch of health related blogs and came across some references to the exercise physiology literature indicating that it is not the specific amount of exercise that has an effect on obesity, but rather the general level of sedentary time of the person. What matters is the integral of activity over time, and exercising a couple of times a week does not have a significant effect on it.

I am the kind of person who does essentially no exercise at all, but I do tend to get restless and move around when sitting in place long stretches of time. So I decided to experiment on myself to quantify how my amount of sedentary time impacts my body fat.

The problem with relying strictly on body mass is that there are other things that contribute to it, like water weight or muscle mass, that could reasonably be expected to change depending on the amount of sedentary time. My solution to this was to buy a scale that measures both weight and body fat percentage. By multiplying weight with body mass percentage (divided by 100) I get body fat mass.

The proper way to measure sedentary time is with a three axis accelerometer, but a good one is over $500 and so was outside my budget. I had to make do with a high end step counter. The problem with a step counter is that it doesn't differentiate between running fast up a hill and gently strolling down a hill. But I am not the kind of person to be running up hills, nor do I live in a hilly area, so I judged it shouldn't be a problem.

So I set about measuring these things. Additionally I set myself the goal to walk places, to that I get at least one hour of walking time per day. But being a lazy person weak of will I would only achieve that goal intermittently. That seemed to me a good thing in that I would get a lot of variability in the number of steps taken to work with.

I have been measuring my weight and body fat percentage every morning after hitting the toilet (to minimize the effect of the weight of waste in the body) and measured the number of steps taken for a few months now. Being bot curious and weak willed of nature I wanted to get some preliminary analysis done now.

The question then becomes how to analyze this data I have so far collected, which, after filtering out missing data points, adds up to 87 data points. I thought about simply running a simple regression and then solving for zero in the resulting model. That would give a a point estimate of where the number of steps start having a negative effect on body fat mass. But I am unsure if the time-series nature of the data would invalidate the result. Nor do I have any idea how I would get a confidence interval for that estimate.

I realize I've rambled on quite a bit here but I am not exactly sure which details are relevant and should be taken into account in the analysis.

Edit:

steps:

8999, 10823, 10025, 4282, 7072, 5895, 8240, 7875, 14176, 
9512, 9454, 5854, 1648, 1834, 10291, 2368, 2884, 7767, 
8026, 1742, 1745, 2629, 8452, 6067, 6215, 6502, 10367, 
7464, 4120, 9644, 5684, 8990, 5446, 8777, 8799, 8100, 8904, 
4846, 4283, 7276, 1784, 6343, 7635, 12544, 3644, 3340, 
4244, 12060, 5485, 6928, 3158, 9358, 5015, 10077, 7988, 
8329, 5954, 2237, 4753, 5992, 6982, 7527, 8813, 4438, 8426, 
7926, 6465, 7660, 8254, 7354, 1032, 6417, 4939, 7562, 8789, 
3895, 3273, 3364, 4358, 8873, 8512, 7248, 4215, 1058, 3904, 
8309, 7159

body fat mass:

17.38, 17.3383, 16.0398, 16.758, 15.9996, 16.1398, 16.8328, 16.3385, 
15.1272, 16.2588, 16.6014, 16.5776, 16.4565, 16.2155, 16.4979, 
15.9984, 16.4358, 16.5528, 15.9594, 15.6418, 15.9594, 16.3812, 
17.1785, 16.863, 16.744, 16.9812, 16.842, 16.6221, 17.114, 15.9001, 
16.359, 16.9812, 17.2584, 17.4618, 16.4016, 16.744, 17.4528, 16.5444, 
17.1842, 17.0826, 17.4618, 16.3358, 15.8004, 16.5737, 17.3383, 
16.4736, 16.1588, 17.114, 15.6618, 16.8167, 16.6155, 16.9974, 
17.1039, 16.9916, 17.91, 16.9644, 15.9399, 17.3528, 17.064, 17.2791, 
15.678, 16.1385, 16.5946, 16.116, 16.611, 16.6779, 17.292, 16.116, 
14.0504, 16.4151, 16.5737, 17.446, 14.6306, 16.4151, 16.6782, 16.464, 
16.669, 16.5424, 16.2288, 16.277, 16.695, 16.277, 16.7323, 17.1864, 
17.1072, 16.653, 15.9996

At least where body fat mass is concerned I figured the mass one day would essentially be the mass of the previous day plus some small change, so it might make more sense to take the differences of the mass and model using that.

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    $\begingroup$ Given that you only have one case, wouldn't it be best just to plot the two measurements, steps taken and body fat burned, and spot a relationship from the graph? The graph would also easily show you if the relationship changes after a given amount of time. With only a single case, concepts of statistical significance and confidence intervals become much less meaningful. $\endgroup$ – Jason O. Jensen Apr 29 '12 at 15:25
  • $\begingroup$ Hmm, day-to-day changes in body fat % of > 1% are not credible (unless you ate a liter of ice cream one day and nothing at all the next) which suggests the measurement error in body fat is at least 1% with your scales (i'm a bit surprised as I have some similar scales but see much less day-to-day variation). I suspect that amount of noise is going to overwhelm any signal. $\endgroup$ – onestop Apr 29 '12 at 19:01
  • $\begingroup$ @onestop I did test the scale by weighing myself repeatedly, and it seemed quite accurate. I suspect part of the problem is that I multiply two measurements together. That would frequently lead to both measurements erroring in the same direction, and thus, I believe, the multiplication would magnify the error. If it did this in one direction one day and the opposite direction the opposite day the change would end up being quite big. $\endgroup$ – Mr Alpha Apr 30 '12 at 18:15
  • $\begingroup$ Sorry I didn't read your post properly and assumed those figures were body fat % not body fat mass in kg, but it doesn't really affect my point. The scale may be accurate in measuring total weight, but much less accurate in measuring body fat %. $\endgroup$ – onestop Apr 30 '12 at 18:55
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You are wise beyond your age ! In truth you are right to raise the question "But I am unsure if the time-series nature of the data would invalidate the result" . The cross-correlation and the "interpretation from graphical presentations" are meaningless when dealing with time series data due to the auto-correlative structure within each series see Pitfalls in time series analysis and in particular http://web.ku.edu/~finpko/myssi/FIN938/Yule.Spurious%20Regression.JRSS_1926.pdf for the debunking . Since you have 87 pairs of values , please post them and I will try and help you further using Transfer Function proceedures (aka multivariate Box-Jenkins).

Modified to reflect an analysis:

The data for body enter image description herefat is shown here . Four possible reasons for Stask throwing his hands up might be due to the impact of some anomalous data and an apparent upwards level shift due to some "lurking determinstic variable" at period 23 . Furthermore upon closer inspection a Box-Cox test detected the need for a log transformation OR 4) there is no relationship provable. The identified intervention points can be seen graphically in enter image description here and are presented in table form here.enter image description here . The final equation is shown here enter image description here and more fully here enter image description here . The Actual and Fitted values resulting from the model is here enter image description here with model residuals here enter image description here . The acf of the model residuals suggest that they have been rendered "informationless" , which is the goal of modelling.enter image description here . In summary a casual glance at either the cross-correlation of the original series or the suitably pre-whitened series emphatically suggest that the two variables are not relatable. enter image description here BUT as that can be quite incorrect as the cross-correlation function is quite impacted by 1) the one-time pulses ; 2) the level shift in Y NOT attributable to X and the non-constant error variance requiring logarithms to be applied to Y. There are a number of textbooks available to econometricians, statisticians and all scientists interested in time series such as http://search.barnesandnoble.com/Time-Series-Analysis/William-WS-Wei/p/9780201159110 and http://www.amazon.com/Time-Series-Analysis-Forecasting-Control/dp/0130607746 which fully cover this subject. Hope this helps as I enjoyed the opportunity to illustrate how to identify a model without being blindsided by Gaussian violations in the original data BUT still arriving at the conclusion of no relationship in a robust manner.

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  • $\begingroup$ Interesting, can I ask what software you used to do this with? $\endgroup$ – Mr Alpha Apr 30 '12 at 18:17
  • $\begingroup$ @MrAlpha I used AUTOBOX available from Automatic Forecasting Systems (www.autobox.com) . I am one of the developers . $\endgroup$ – IrishStat May 1 '12 at 22:40
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How much time series analysis do you know? The topics that will likely help you:

  1. ARIMA models (AutoRegressive, Integrated and Moving Average problems). Box-Jenkins framework that @IrishStat mentioned is that of univariate ARMA models.
  2. Distributed lags models (the fat you see decreasing today may have been the function of the exercise you had yesterday or two days ago)
  3. Granger causality (whether one time series causes another)
  4. Threshold autoregressive models (whether the coefficient of a variable changes when this or another variable exceeds a threshold value)

The standard time series references are Hamilton (for economists; I found it to be dry and somewhat unwieldy reading) and Brockwell and Davis (for statisticians, won't have as much causal modeling as Hamilton would)

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  • $\begingroup$ Having taken a look at your data, I don't think you can see any sort of pattern or dependence with any of these methods. You'd have to collect another two-three-better five hundred points! $\endgroup$ – StasK Apr 29 '12 at 17:47

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