1
$\begingroup$

I have a dataset with x and y values which are both calculated averages from three values and consequently they also have an associated error.

I have about 100 x,y points which I want to plot. Adding both horizontal and vertical error bars is a good method, only there are too many points and it doesn't look nice. In this graph (excel example below) I can see that in some zones the vertical error reaches the furthest and in some zones the horizontal error reaches furthest.

To make a nicer graph I want to use the largest error and make an error area (instead of error bars). But I am quite puzzled by the mathematics and how I should write a script or use a graphical tool to create such a graph.

I would think there should be some kind of solution with a loop going through each x and y value and looking for the min and max for each original xy point, but I couldn't get the maths right to do this.

Is there anybody familiar or sees a solution to this problem, preferably implementable in R.

enter image description here

$\endgroup$
2
$\begingroup$

A couple of options:

If the main objective is to de-clutter your plot, one option is to assign different colors to the x- and y-error bars and removing the crossbars at the ends of the error bars. Using ggplot you can accomplish this by setting the color aesthetic for each set of error bars individually. Also, use geom_linerange to remove the crossbars for the y-error bars. For some reason, the default behavior for geom_errorbarh is to not plot crossbars.

library(tidyverse)

# simulate some data
df <- data_frame(x = seq(0, 3, length.out = 100)) %>%
  mutate(y = 400 - 25*x^2,
         xerr = .05 + .1*x,
         yerr = .1*y,
         xmin = x - xerr,
         xmax = x + xerr,
         ymin = y - yerr,
         ymax = y + yerr)  

# plot using different colors
ggplot(df, aes(x, y)) +
  geom_linerange(aes(ymin = ymin, ymax = ymax)) +
  geom_errorbarh(aes(xmin = xmin, xmax = xmax), color = 'blue') + 
  geom_line(color = 'red')

error band using different colored error bars

Otherwise, if you truly want a band instead of individual error bars, could plot polygons that encompass the greatest extent of the x- and y-error of each point. In ggplot this is accomplished by defining a path around each x, y pair. Overplotting will produce the band you're trying to create.

I do have some misgivings about suggesting this, however. Presumably the error bars are some sort of confidence interval on the means of x and y. The corresponding confidence region on the joint distribution of x and y is not the rectangle spanned by the error bars but an ellipse.

# calculate path for polygons
mutate(df, group = 1:nrow(df)) %>%
  select(-x,-y, -xerr, -yerr) %>%
  gather(xtype, x, xmin, xmax) %>%
  gather(ytype, y, ymin, ymax) %>% 

  # sort rows so that we get rectangles and not bow-ties
  mutate(order = 
           ifelse(xtype == 'xmin' & ytype == 'ymin', 1,
                  ifelse(xtype == 'xmax' & ytype == 'ymin', 2,
                         ifelse(xtype == 'xmax' & ytype == 'ymax', 3, 4)
                         )
                  )
         ) %>%
  arrange(order) %>%

  # plot
  ggplot(aes(x,y)) + 
  geom_polygon(aes(group = group), fill = 'grey') + 
  geom_line(data = df, color = 'red')

error band using geom_polygon

$\endgroup$

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Not the answer you're looking for? Browse other questions tagged or ask your own question.