I am trying to run a two-way ANOVA in JMP where I have the following variables-
Fixed effects: 1. Genotype (categorical) 2. Temperature (categorical)
Random effect: 1. Subject (animal)
I am using the same subject for different temperatures, violating the independent measures assumption of two-way ANOVAs. If I account for random effect of subject nested within temperature, does that satisfy the independent measures assumption?
I am satisfying equal variance assumption but violating normal distribution. Is it necessary to choose a non-parametric test if I'm violating normal distribution?
Any help is greatly appreciated!