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I tried to find papers working out different estimators for CAPM beta or 3 or 4 factor model but couldn‘t find any. Do you know if anyone has used machine learning techniques like xgboost or neural networks for estimating financial betas?

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CAPM is a model, so you need an estimation technique (such as least squares or maximum likelihood) to estimate its parameter(s). Meanwhile, neural networks and decision trees are models, not estimation techniques, so they cannot be used for estimating the parameter(s) of a given model.

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