The paper I am reading gives a table of results for 3 different models:
The paper doesn't explain how the correction is performed, and it clearly isn't Bonferroni. Does someone have an idea how this correction is performed?
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I wasn't diligent enough before posting the question, as the answer lies in the RobustSNP publication, and not the general knowledge of multiple testing corrections:
Here they explain their MAX3 correction, which estimates the covariance matrix of different genetic models. Thank you for your time!
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1$\begingroup$ OK. I looked at this for quite some time yesterday and was convinced they had done something wrong or used a non-standard approach for error correction. It does indeed seem they used some non-standard approach contained in a non-standard R package. Glad to see you figured this out! Thanks for posting the answer. $\endgroup$ May 30, 2019 at 15:24