I have been using lmp function from lmPerm package to calculate differences between treatment levels (2-ANOVA). Now, I am wondering how to report lmp results in a scientific publication?

I am aiming for a biological or geochemical journal, but have been using APA style in reporting statistics previously. I am not sure whether this is the desired way either, but at least their rules seem well defined.

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    $\begingroup$ As you can see in this answer to my question here, lmPerm is perhaps not to be trusted. Results may be not correct. I recommend you use coin instead. $\endgroup$
    – Henrik
    Nov 19, 2012 at 18:23
  • $\begingroup$ @Henrik. Thanks for your comment. Hmmm...I do not experience jumping p values with my dataset. Actually I get almost the same p values than with lm function, although factors seem to be heteroskedastic to some degree. $\endgroup$
    – Mikko
    Nov 19, 2012 at 20:09
  • $\begingroup$ Do you mean lmp in place of lm (because the latter defaults to treatment contrasts, not Tukey HSD). $\endgroup$
    – chl
    Nov 19, 2012 at 20:52
  • $\begingroup$ @chl I am not sure what I mean. I edited the question. $\endgroup$
    – Mikko
    Nov 19, 2012 at 20:58


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