In Partial Least Squares Regression, we can set a threshold to variable of importance scores to extract variables that have significant influence over the output. We can then reduce the model size to include only the variables that are significant according to the Variable of Importance score threshold. In principle, I would imagine that the Q2Y (total variance predicted by Y) of the smaller model to increase, but is it possible to have this Q2Y decrease? If so, what does this mean?

  • $\begingroup$ Can you please explain your abbrevs? $\endgroup$ – kjetil b halvorsen Jul 21 '20 at 16:03
  • $\begingroup$ PLSR means partial least squares regression, VIP means variable of importance, and Q2Y means total variance predicted by Y. $\endgroup$ – ss_19 Jul 21 '20 at 21:22
  • $\begingroup$ Can you please add this new information as an edit to the post? Not everybody reads comments ... $\endgroup$ – kjetil b halvorsen Jul 21 '20 at 21:37

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