I have my results for my LME and am wondering how I should report these:
Linear mixed-effects model fit by REML
Data: anovatuk
AIC BIC logLik
-887.2886 -866.0678 448.6443
Random effects:
Formula: ~1 | ID
(Intercept) Residual
StdDev: 0.0737231 0.09767646
Fixed effects: distance ~ region
Value Std.Error DF t-value p-value
(Intercept) 1.1185789 0.03676021 505 30.429070 0.0000
regionPU -0.0174890 0.04023870 505 -0.434630 0.6640
regionU -0.0308177 0.04334312 505 -0.711017 0.4774
Correlation:
(Intr) regnPU
regionPU -0.746
regionU -0.719 0.876
Standardized Within-Group Residuals:
Min Q1 Med Q3 Max
-3.8985706 -0.6273493 0.1357286 0.7493181 1.7777268
Number of Observations: 518
Number of Groups: 11
There is clearly a significant difference between the intercept and the other regions, however, I believe reporting the p-value is not sufficient.
I additionally ran an analysis of deviance and an emmeans
, should I be reporting the chi-squared value in addition to the p-value or declare the confidence limits perhaps?:
Anova(lme.odba,type="III")
Analysis of Deviance Table (Type III tests)
Response: distance
Chisq Df Pr(>Chisq)
(Intercept) 925.9283 1 <2e-16 ***
region 0.6589 2 0.7193
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
> #Estimated marginal means - site factor
> #Use emmeans where the factor has levels
> emmeans(object = lme.odba,
+ specs = 'region',
+ data = anovatuk)
region emmean SE df lower.CL upper.CL
FO 1.12 0.0368 10 1.04 1.20
PU 1.10 0.0277 10 1.04 1.16
U 1.09 0.0306 10 1.02 1.16