Two sets of comparisons were performed between original clustering and the new clustering using several indices and metrics of performance. Below are the two initial clusterings or partitions (these should be the truth or original partitions), they are two because samples were taken from two different locations and that's why we have always two sets of partitions:
The image below shows the new clusterings obtained by utilizing only a subset of data for each location instead of the whole dataset and then were compared with the original ones (obtained using the whole dataset), i.e., left original with left new, right original with right new.
The two partitions were compared with their original coutner part (left with left, right with right) as I said and below were the results:
Name Part1 (Lt) Part2 (Rt) 1 Purity 0.9633028 0.7431193 2 VI 0.2451685 1.1486369 3 NMI 0.8673525 0.4062956 4 Split/Join 8.0000000 62.0000000 5 Adjusted Rand 0.8750403 0.2131243 6 Rand 0.9374788 0.6083928 7 Jaccard 0.8800522 0.4045466
VI short for "Variation of Informaiton"
NMI short for "Normalized Mutual Information"
ARI short for "Adjusted Rand Index"
split/join is also known as
van Dongen S
So it clear that the left new partition is much similar to its left original counterpart partition. The right new partition was way different from its right original counterpart. Samples were numbered from 1 to 34 (y-axis) and were sampled at five different occasions (x-axis). Purity measure was in line with the above and is easy to grasp. The other indices/metrics as far as I know, each measures a different thing. But to be honest as a non-statistician I cannot relate to the extensive math behind each of them. So my request from the community is how to interpret these indices with respect to the partitions in the images below without using fancy statistical terms (I have already came across a bunch of them elsewhere) but rather in simple plain English.
For example (pls correct me if I am wrong), I learned the following:
- Jaccard distance measures how far one partition from the other, it can be obtained by 1-Jaccard index, which makes sense
VI; it measures rather difference than similarity, its values is not between 0 and 1 like
NMI, it is something between 0 and not more than $2log k$. $k$ is the number of clusters so if 4 as in this case the value should not be more than 2.log4 = 2.772589.
NMIis between 0 and 1 (NMI = 0, two partitions contain no information about one another, NMI = 1, two partitions contain perfect information about one another)
ARIis the same as Rand Index but corrected for chance. This measure is zero when the Rand index takes its expected value, and has a maximum of one.
I would be very grateful to have an intuitive interpretation for Split/Join metric (as proposed by Micans, also known as van Dongen S metric), VI what does it measure exactly in relation to the images of the example shown, Jaccard how different is it from Rand? Pls feel free to correct any misconceptions posted in this question. I want to grasp the intuition behind and learn from you the correct way to interpret these measures and how they could help understand partitions from their different angles of view. Having results is fine but commenting on them is an art requires deep understanding of the tools and the philosophy behind them, may I find this with you? I hope.