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I have a series of left-skewed/heavy tailed distributions that I would like to show. There are 42 distributions across three factors (labeled as A, B and C below). Also, the variation is shrinking across factor B.

The issue I have is that the distributions are hard to differentiate across the scale of the outcome (a ratio or fold-change):

enter image description here

Logging the data seems to over-emphasizes the left skewness and moves more samples into the tails (creating a mash of outlier points):

enter image description here

Does anyone have suggestions on other techniques for visualizing these data?

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    $\begingroup$ Logging is often used to reduce right-skewness, so it can be expected to increase left-skewness. The exp() transformation is its inverse, but that is probably far too strong here. Squaring is a milder alternative. You don't say what sample size(s) you have. It is not obvious that the main problem is really left skewness, rather than a few moderate outliers in the left tail in B1. Is there no science here to throw light on this? $\endgroup$ – Nick Cox Mar 25 '14 at 0:55
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    $\begingroup$ The sample size per box plot is about 100. The values are speed-ups achieved by a new computational algorithm (i.e. old run-time/new run time). There are occasions where it does not produce significant time savings so the distributions tend to trail off to the left. $\endgroup$ – topepo Mar 25 '14 at 1:25
  • $\begingroup$ Thanks. The number of points beyond the whiskers seems to be rather small then. $\endgroup$ – Nick Cox Mar 25 '14 at 1:49
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    $\begingroup$ What is it about these distributions that you want to see better? The current plot looks good to me: C makes very little, if any, difference; higher B makes tighter & lower distributions; & higher A goes w/ higher values. $\endgroup$ – gung - Reinstate Monica Nov 30 '16 at 18:20
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Just an idea: if you can describe the distributions you got relatively well with a normal distribution, you can do 2-dimensional plots showing the impact of A, B and C on the fitted distributions parameters: mean and standart deviation.

Or you try to find other describing measures for the distribution that you got and show the impact of the three variables on them.

If you find that two variables have interactions, you can do a 3d plot. Lets hope they do not all interact with one another. ;)

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