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Having read "Restricted Boltzmann Machines for Collaborative Filtering" (Salakhutdinov et. al. 2007), I'm wondering if there has been any follow-up work on applying graphical and/or deep architectures for recommendation engines.

The paper suggests some interesting possible extensions, such as using stacked RBMs instead of single-layer ones. However, I didn't find any follow-up papers by Salakhutdinov's publication page.

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There are some publications using auto encoders instead of RBMs. This article is really interesting: https://www.nicta.com.au/pub-download/full/8604/

There is also works on content-based recommendation using deep learning techniques such as this from spotify: http://benanne.github.io/2014/08/05/spotify-cnns.html

Another very recent (2016) publication is "Deep Neural Networks for YouTube Recommendations" https://research.google.com/pubs/pub45530.html - It feeds a deep network with user activies and video embeddings and dense features as well

Those works could lead you to great references also.

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