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Questions tagged [partial-least-squares]

A class of linear methods for modeling the relationship between two groups of variables, X and Y. Includes PLS regression.

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Is this an example of where I shouldn't scale before doing PCA / PLS?

I'm working with NMR spectra (it's a common chemical test). There are various peaks of the signal across a range of ppm values. I'm trying to relate the NMR spectra of various samples to a ...
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Partial Least squares regression - Variable Importance on Projection (VIP) method of selecting variables

I understand that partial least squares regression produces VIP scores for each predictor variable enabling variable selection (using a VIP threshold of >1). Does this method account for collinearity ...
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Replicating partial least squares (NIPALS) results using ordinary least squares regression in Tensorflow?

I have multivariate variables that I want to regress to a single target label. For some reason, using partial least squares regression (projected to a single component) gives much better prediction ...
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Partial Least Square - choosing number of factors

I'm trying to implement PLS in R (using the package "PLS") to a time series consisting on realized variance of the S&P 500 and macroeconomic variables, however, I've notice they use cross-...
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Partial Least Squares regression - coefficients vs loadings

In partial least squares regression, what is the difference between the regression coefficients and the loadings for each independent variable in each component? Specifically, I understand in evety ...
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What is the origin of the PLS1 algorithm given on the PLS Wikipedia page?

The Wikipedia page for Partial Least Squares (PLS) gives an algorithm for the method which is uncited and for which I cannot find the source material. It appears to be very much simpler than most if ...
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32 views

What's the difference between loadings from partial least squares (PLS) regression and beta coefficients from multiple linear regression?

I have a set of independent variables (X1, X2, ..., X10) and I have run a PLS to find a combination of the X1, X2, ..., X10 that best predicts an outcome Y (a single-variable outcome). As a result, I ...
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why does preprocessed test data change with change of calibration data in PLS-DA?

why does preprocessed test data change when calibration dataset (and model based on that data) changes? i have spectral, normalized datasets, the preprocessing was 1. derivative + autoscale. for ...
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Calculating Variable Importance for Feature Selection - PLSR

I have used the plsr() function in R (from the pls package) to predict a Y variable using many X variables (spectral bands) - and am wanting to calculate variable importance (ViP) to begin to reduce ...
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Is there a theoretical basis for using partial least squares with categorical responses

I am using what is called PLS-DA in JMP to find a model for predicting a categorical (Positive/Negative) response. The documentation says that the responses are simply coded as 0/1, thereby ...
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Partial Least Square vs Principle Component Regression

Is it the case where PLS, when compared to PCR with all things equal, generally gives lower bias but higher variance when regressed against a response Y, since PLS relates to/makes use of Y but PCR ...
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Partial Least Squares Regression : deflation of the Y matrix

I am digging deep into the PLSR algorithms and while I have found multiple flavours of if (different normalisations, SIMPLS,..), there is always something in the Y deflation that is throwing me off ...
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Is it appropriate/possible for me to use PLS regression for my problem?

Im currently writing a dissertation on the effect of cultural dimensions on technology acceptance. In order to collect data I have used a questionnaire with questions relating to technology acceptance,...
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PLS (Partial Least Squares) deflation and graphics

I have been working with pls for a little while now. I have a question in terms of the deflation of both the $X$ and $Y$ matrices. In the literature I have found different methods over which deflation ...
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Formulating Partial Least Squares as minimizing squared error

The book chapter linked below (see section 4.3.1) lists a few formulations of partial least squares (PLS). The first two make sense to me and seem standard: $$\underset{\mathbf{u}, \mathbf{v}}{\text{...
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How to compute/plot the contribution of each original descriptor in a final PLA regression model?

New to scikit-learn. I am using v 20.2. I am developing PLS regression models.I would like to know how important each of the original predictors/descriptors are in predicting the response. The ...
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Choosing number of factors in PLSR

Im confused about how many factors I should choose for my prediction model. I am using Unscrambler X to do PLSR. Unscrambler is supposed to suggest the optimal number of factors. It suggests 4 factors ...
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Will PLSR work on nonlinear dataset?

Im new to this topic and a bit confused. When I read about PLSR on the web I only see examples where the original plot shows a somewhat linear relationship in the data set, but in my case I have a ...
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Partial least squares and its variants

What is the difference between PLS, PLS-DA, PLS-PM and PLS-SEM? I could not find a single article that describes the differences.
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Screening data prior to PCA v. PLS

I have a very large time series matrix $X$, where the number of observations (rows) $n$ is much smaller than the number of input variables (columns) $p$. My aim is to use the information in $X$ to ...
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Non-linear multivariate analysis / partial least squares

When dealing with multivariate analysis with variables that have a mix of linear and non-linear relationships (example: two variables are linearly related but one of these maybe non-linear with ...
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3% explained variance in PLSR

My dataset contains 3 inputs and 1 output with 36000 samples. With PCA analysis I can explain 100% of the variance with 2 components. But when I do PLSR I only get 3% explained variance. Ive only done ...
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Interpret reuslts of PLS regression coefficients

I have performed PLS regression using sklearn library (python 2.7) over three types of soil (PLS model per soil type) and I plotted the regression coefficients, but ...
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I'd like to do regression using canonical correlation analysis

I got two multidimensional datasets, X and Y. I thought I build the model, which explains the relationship between two datasets, using canonical correlation analysis (CCA). The first correlation ...
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Analysis of model and data relationship in PLSR

Validated! This is a quite broad subject topic but I will try to boil it down into a few specific questions. I've been working with a clients data on a PLS (partial least squares/project to latent ...
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What is the point of using PRESS instead of RMSECV?

What is the point of using predicted residual sum of squares (PRESS) instead of root-mean-squared-error-of-cross-validation(RMSECV)? In many books, especially in the area of chemometrics, the authors ...
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Finding correlation between 2 predictors and a response

I've created a dataset, where the response, y, is related to the predictors X1, X2, by the formula: y = 2X1 + 5X2. If we look at correlating y with X1, and then y with X2, we get the following: And ...
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Partial least square different maximization programs

PLS regression is a regression method based based on latent variables in order to handle collinearity or violation of full rank assumption in linear regression. Latent variables called components are ...
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How to explain variance in SEM?

I am writing a paper discussion based on SEM findings to a non-statistical audience. For example, how do we explain the concept of R-square (variance) in plain language -- 'The model rationalizes a ...
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LM Stat - Confirmatory Factor Analysis

The output of the Confirmatory Factor Analysis provides the "LM Stat provides a rank order of the 10 largest LM stat for Path Relations." Can we include more than one path into the model or are we ...
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21 views

Confirmatory Factor Analysis - Variance Parameters - Error Variance Estimates

I am referring to a confirmatory factor analysis output. I am curious to know how do we interpret the "Variance Parameters" Output containing the "error variance estimates" if the predictors are ...
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Inference using model with low goodness of fit.

Assuming a model is correctly specified, would it be appropriate to draw inferences based on a model with a low Goodness of Fit (~0.15)? Of course, using such a model to make predictions is likely ...
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Items measured with 5 and 7 point Likert scale in PLS-SEM analysis

Some items in the questionnaire were measured with the 7-point Likert scale and some with the 5-point one. I am doing PLS-SEM analysis of the data in SmartPLS. Are there any additional steps to take ...
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categorical predictors in partial least squares

I am interested in running a partial least squares analysis using PROC PLS in SAS 9.4. I understand that, by default, the predictors and response variables in PLS are centered to a mean 0 and scaled ...
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Does Kennard-Stone data splitting cause optimistic validation performace where n << p?

I am currently dealing with data where the number of variables is ~3000 and number of samples is ~100. This is usually no big deal since the variables are highly correlated (spectral data). ...
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How do I use predictors/independent variables with different types in a regression algorthim?

I want to predict properties of a physical system (e.g. dimension, weigth, number of items) based on a set of known attributes for the system. I have a good, large database of executed systems ...
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Fixed y and solve $x_i$ in regression

Suppose we have three explanatory variables like $x_1,x_2,x_3$ and three response variables like $y_1, y_2, y_3$, we know that y should be a function of x, such that $$ (y_1,y_2,y_3) = f(x_1,x_2,x_3) $...
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Omitted Variables in Partial Least Squares

Suppose I run PLS of $y$ on $X$, where $y$ is a 1-dimensional and $X$ is n-dimensional. If I deleted some variables (columns) in the matrix $X$, how would the loadings and the factors behave? Will it ...
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PLS Structural equation modelling

In PLS structural equation modelling when dealing with the outer model (relationship between latent variable and its items) if there is a variable which does not meet the quality criteria should I ...
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Partial Least Squares NIPALS Algorithm when Y has more than one column (PLS2)

I wanted to exactly understand how Partial Least Squares Regression works and thus got my hands onto a paper called "A Simple Explanation of Partial Least Squares". After some thinking and consulting ...
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regression - Considering all interactions between variables. PLS, Regression, or neither?

I am dealing with a dataset where p>>N and I have executed several different techniques to understand what are the most important features. These include, ...
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180 views

Beta coefficient (Partial Least Squares)

Kindly advise if the value of beta is obtained in the results when a Regression analysis, Pearson Correlation or Partial Correlation is conducted. I understand that beta reveals the strength of a ...
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Partial Least Squares Multinomial Regression

Background: PLS regression is a nice method to develop prediction models from data with large dimensional highly correlated measurements/predictors (e.g., spectral or other frequency domain data with ...
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The limit of “unit-variance” ridge regression estimator when $\lambda\to\infty$

Consider ridge regression with an additional constraint requiring that $\hat{\mathbf y}$ has unit sum of squares (equivalently, unit variance); if needed, one can assume that $\mathbf y$ has unit sum ...
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How to treat “unbalanced” predictor variables in partial least squares (PLS)?

I am using partial least squares regression (PLS) to model the relative effects of soil and weather variables on the magnitude of an annual phenomenon, nitrous oxide emissions. I am doing this on an ...
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Packages that implement kernel form of NIPALS algorithm [closed]

I'd like to provide a list of custom kernels (such as kernel from euclidean dot product of features, topological kernels etc) to the kernel PLS (Rosipal, Trejo, 2002) algorithm. Is there a package ...
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Is there rotational ambiguity in PLS?

There are linearly overlapped components typically in curve resolution or factor analysis techniques [1] [2]. Also for PCA, it is common that it is easy to change the sign of the loadings or scores ...
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Combining PLS-DA with PCA dimension reduction

I am implementing the PLS-DA method presented here on a data set and I am trying to understand the procedure; and whether there is anything conceptually wrong in my steps. I start with $188 \times ...
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266 views

PLS-DA for varible selection and then LDA for classification

I have been trying to do classification of my hyperspectral data. The variable selection were done with variable importance in projection in pls-da. The selected variables were then used for ...
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189 views

plsr output RMSEP increasing as number of components

I have a dataset with 20 rows and 480 columns. When I run plsr command with validation="LOO" my output shows RMSEP or CV is increasing with number of components and stabilizing after 6 components. My ...