Questions tagged [partial-least-squares]

A class of linear methods for modeling the relationship between two groups of variables, X and Y. Includes PLS regression.

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101 views

meaning of projection subspace in a PLSDA plot

I have a dataset with a handful of predictors and one output variable which is categorical and can only be C or N. I am working ...
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32 views

How is this standard error obtained?

I am working through the exercises in Kuhn and Johnson's "Applied Predictive Modelling" and cannot reproduce one of their results in the exercises. Looking at 4.3 we have ... find the number of ...
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394 views

How to interpret weights of a PLS SEM model

I made a PLS SEM model using smartPLS, consisting only of formative constructs. I managed to get weights out of the software, which all had excellent t values. The only thing is, I am not entirely ...
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92 views

When does partial least squares provide >1 component solutions?

I'm a beginner to using partial least squares analyses, so apologies if this question is a bit basic. I've been trying out PLS models on my datasets and it usually says that a single component can ...
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83 views

Is this an example of where I shouldn't scale before doing PCA / PLS?

I'm working with NMR spectra (it's a common chemical test). There are various peaks of the signal across a range of ppm values. I'm trying to relate the NMR spectra of various samples to a ...
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961 views

Partial Least Squares regression - coefficients vs loadings

In partial least squares regression, what is the difference between the regression coefficients and the loadings for each independent variable in each component? Specifically, I understand in evety ...
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208 views

What is the origin of the PLS1 algorithm given on the PLS Wikipedia page?

The Wikipedia page for Partial Least Squares (PLS) gives an algorithm for the method which is uncited and for which I cannot find the source material. It appears to be very much simpler than most if ...
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74 views

why does preprocessed test data change with change of calibration data in PLS-DA?

Why does preprocessed test data change when calibration dataset (and model based on that data) changes? I have spectral, normalized datasets, the preprocessing was 1. derivative + autoscale. For ...
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96 views

Is there a theoretical basis for using partial least squares with categorical responses

I am using what is called PLS-DA in JMP to find a model for predicting a categorical (Positive/Negative) response. The documentation says that the responses are simply coded as 0/1, thereby ...
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36 views

Partial Least Square vs Principle Component Regression

Is it the case where PLS, when compared to PCR with all things equal, generally gives lower bias but higher variance when regressed against a response Y, since PLS relates to/makes use of Y but PCR ...
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171 views

Partial Least Squares Regression : deflation of the Y matrix

I am digging deep into the PLSR algorithms and while I have found multiple flavours of if (different normalisations, SIMPLS,..), there is always something in the Y deflation that is throwing me off ...
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127 views

PLS (Partial Least Squares) deflation and graphics

I have been working with pls for a little while now. I have a question in terms of the deflation of both the $X$ and $Y$ matrices. In the literature I have found different methods over which deflation ...
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Formulating Partial Least Squares as minimizing squared error

The book chapter linked below (see section 4.3.1) lists a few formulations of partial least squares (PLS). The first two make sense to me and seem standard: $$\underset{\mathbf{u}, \mathbf{v}}{\text{...
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How to compute/plot the contribution of each original descriptor in a final PLA regression model?

New to scikit-learn. I am using v 20.2. I am developing PLS regression models.I would like to know how important each of the original predictors/descriptors are in predicting the response. The ...
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127 views

Choosing number of factors in PLSR

Im confused about how many factors I should choose for my prediction model. I am using Unscrambler X to do PLSR. Unscrambler is supposed to suggest the optimal number of factors. It suggests 4 factors ...
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39 views

Will PLSR work on nonlinear dataset?

Im new to this topic and a bit confused. When I read about PLSR on the web I only see examples where the original plot shows a somewhat linear relationship in the data set, but in my case I have a ...
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1answer
169 views

Screening data prior to PCA v. PLS

I have a very large time series matrix $X$, where the number of observations (rows) $n$ is much smaller than the number of input variables (columns) $p$. My aim is to use the information in $X$ to ...
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28 views

Non-linear multivariate analysis / partial least squares

When dealing with multivariate analysis with variables that have a mix of linear and non-linear relationships (example: two variables are linearly related but one of these maybe non-linear with ...
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Interpret reuslts of PLS regression coefficients

I have performed PLS regression using sklearn library (python 2.7) over three types of soil (PLS model per soil type) and I plotted the regression coefficients, but ...
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I'd like to do regression using canonical correlation analysis

I got two multidimensional datasets, X and Y. I thought I build the model, which explains the relationship between two datasets, using canonical correlation analysis (CCA). The first correlation ...
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94 views

What is the point of using PRESS instead of RMSECV?

What is the point of using predicted residual sum of squares (PRESS) instead of root-mean-squared-error-of-cross-validation(RMSECV)? In many books, especially in the area of chemometrics, the authors ...
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1answer
63 views

Finding correlation between 2 predictors and a response

I've created a dataset, where the response, y, is related to the predictors X1, X2, by the formula: y = 2X1 + 5X2. If we look at correlating y with X1, and then y with X2, we get the following: And ...
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Partial least square different maximization programs

PLS regression is a regression method based based on latent variables in order to handle collinearity or violation of full rank assumption in linear regression. Latent variables called components are ...
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Confirmatory Factor Analysis - Variance Parameters - Error Variance Estimates

I am referring to a confirmatory factor analysis output. I am curious to know how do we interpret the "Variance Parameters" Output containing the "error variance estimates" if the predictors are ...
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33 views

Inference using model with low goodness of fit.

Assuming a model is correctly specified, would it be appropriate to draw inferences based on a model with a low Goodness of Fit (~0.15)? Of course, using such a model to make predictions is likely ...
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229 views

Items measured with 5 and 7 point Likert scale in PLS-SEM analysis

Some items in the questionnaire were measured with the 7-point Likert scale and some with the 5-point one. I am doing PLS-SEM analysis of the data in SmartPLS. Are there any additional steps to take ...
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448 views

categorical predictors in partial least squares

I am interested in running a partial least squares analysis using PROC PLS in SAS 9.4. I understand that, by default, the predictors and response variables in PLS are centered to a mean 0 and scaled ...
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How do I use predictors/independent variables with different types in a regression algorthim?

I want to predict properties of a physical system (e.g. dimension, weigth, number of items) based on a set of known attributes for the system. I have a good, large database of executed systems ...
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Fixed y and solve $x_i$ in regression

Suppose we have three explanatory variables like $x_1,x_2,x_3$ and three response variables like $y_1, y_2, y_3$, we know that y should be a function of x, such that $$ (y_1,y_2,y_3) = f(x_1,x_2,x_3) $...
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60 views

Omitted Variables in Partial Least Squares

Suppose I run PLS of $y$ on $X$, where $y$ is a 1-dimensional and $X$ is n-dimensional. If I deleted some variables (columns) in the matrix $X$, how would the loadings and the factors behave? Will it ...
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PLS Structural equation modelling

In PLS structural equation modelling when dealing with the outer model (relationship between latent variable and its items) if there is a variable which does not meet the quality criteria should I ...
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161 views

Partial Least Squares NIPALS Algorithm when Y has more than one column (PLS2)

I wanted to exactly understand how Partial Least Squares Regression works and thus got my hands onto a paper called "A Simple Explanation of Partial Least Squares". After some thinking and consulting ...
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regression - Considering all interactions between variables. PLS, Regression, or neither?

I am dealing with a dataset where p>>N and I have executed several different techniques to understand what are the most important features. These include, ...
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487 views

Beta coefficient (Partial Least Squares)

Kindly advise if the value of beta is obtained in the results when a Regression analysis, Pearson Correlation or Partial Correlation is conducted. I understand that beta reveals the strength of a ...
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318 views

Partial Least Squares Multinomial Regression

Background: PLS regression is a nice method to develop prediction models from data with large dimensional highly correlated measurements/predictors (e.g., spectral or other frequency domain data with ...
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1k views

The limit of “unit-variance” ridge regression estimator when $\lambda\to\infty$

Consider ridge regression with an additional constraint requiring that $\hat{\mathbf y}$ has unit sum of squares (equivalently, unit variance); if needed, one can assume that $\mathbf y$ has unit sum ...
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106 views

How to treat “unbalanced” predictor variables in partial least squares (PLS)?

I am using partial least squares regression (PLS) to model the relative effects of soil and weather variables on the magnitude of an annual phenomenon, nitrous oxide emissions. I am doing this on an ...
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166 views

Is there rotational ambiguity in PLS?

There are linearly overlapped components typically in curve resolution or factor analysis techniques [1] [2]. Also for PCA, it is common that it is easy to change the sign of the loadings or scores ...
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459 views

Combining PLS-DA with PCA dimension reduction

I am implementing the PLS-DA method presented here on a data set and I am trying to understand the procedure; and whether there is anything conceptually wrong in my steps. I start with $188 \times ...
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626 views

PLS-DA for varible selection and then LDA for classification

I have been trying to do classification of my hyperspectral data. The variable selection were done with variable importance in projection in pls-da. The selected variables were then used for ...
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343 views

plsr output RMSEP increasing as number of components

I have a dataset with 20 rows and 480 columns. When I run plsr command with validation="LOO" my output shows RMSEP or CV is increasing with number of components and stabilizing after 6 components. My ...
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414 views

Partial least squares regression component selection based on Q2

I am working on high dimensional biological data and I am trying to use PLSR to build a model and identify important variables. The dataset has 427 X variables and 1 response variable for 16 ...
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2k views

Difference between PLS regression and PLS path modeling. Criticism of PLS

This question was asked here but no one gave a good answer. So I think it's a good idea to bring it up again and also I would like to add some more comments/questions. The first question is what is ...
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111 views

RMSECV monotonically increasing - interpretation?

I used partial least squares regression (no intercept) with 10-fold cross validation and my RMSECV monotonically increases as shown below: I cannot find any literature on this phenomenon - does it ...
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1answer
162 views

Train and test a PLS model with simulated contaminations spectra

The data I have to analyze are as follows. There are three group of samples: the reference samples (REF, 100 samples) and two groups of contaminants (Ca, 100 samples and Cb, 10 samples). I have ...
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822 views

Difference between loadings and weights in Partial Least Squares Regression

I'm doing PLSR for the data.frame below I wonder what is the difference between loadings and loading.weights? Given that they ...
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194 views

Does PLS have a corresponding objective function to PCA's?

Paraphrased from Understanding Machine Learning by Shalev-Shwartz: Let $\mathbf{x}_1, \dots, \mathbf{x}_m \in \mathbb{R}^d$, $\mathbf{W}$ an $n \times d$ matrix with real entries, and $\mathbf{U}$...
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Define the number of components for PLSR when RMCEP doesn't stabilize

According to pls package, you can define the number of components of plsr using RMCEP. I tried to do the same for the df, using this code ...
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823 views

partial least squares with two dependent variables, one continuous and the other binary

I can do use pls2 to predict multiple dependent variables from a matrix of predictor variables at once as follows: ...
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Magnitude and direction of relationship between predictors and dependent in regression

I'm doing partial least squares regression (PLSR), using the df below, to investigate how to predictors (catchment characteristics) influence the dependent (nitrogen in the river). In this data.frame, ...