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Questions tagged [tukey-hsd]

Tukeys Honest Significant Difference (HSD) is a multiple comparison method based on the studentized range distribution.

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20 views

Post hoc for Levene test

I have a problem regarding my data analysis. One of my hypothesis is basically that my groups will differ in terms of spread of the scores, indicating that there would be a difference in extremity ...
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1answer
35 views

Dumb question about splitting groups for statistical comparisons

I have a dumb question that I cannot answer based in my biological background. I conducted one experiment with 5 replicates and 4 treatments. There were two goals: the first goal was to elucidate ...
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1answer
8 views

Tukey Kramer and the reduction of type one error

I hope everyone is doing well. I understand that the Tukey Kramer reduces the chance of getting a type 1 error by using a pooled variance. That pooled variance then gives you a lower standard error ...
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1answer
37 views

TukeyHSD p-value is less than t-test p-value

I have some data where when I do t.test for a specific pair of groups, the p-value is (barely) higher than when I do TukeyHSD ...
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1answer
73 views

How to calculate Tukey-adjusted p-values for emmeans pairwise comparisons?

I would like to calculate Tukey-adjusted p-values for emmeans pairwise comparisons. I know that these can be obtained directly with functions like pairs() and CLD(). However, when there are three ...
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2answers
38 views

Multiple comparison problem

If I conduct 19 tests (e.g. 19 pairwise comparisons of treatment means in an experiment), what is the probability that I will find at least one P value < 0.05 due to chance alone? With number of ...
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42 views

PostHoc Tests after two way anova in R [closed]

I have a data table with 2 explanatory variables: Noise, with 2 levels ("Exposed", "Unexposed") Voltage, with 9 levels The dependent variable is Delta Cm So, after checking Normality and variance ...
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13 views

1) Am i right in conducting an ANOVA 2) no p value because of lack of results

Im unsure whether I should conduct a two way ANOVA as GLM on minitab 17. Got seven mutant plants (with different knockout genes, including the wildtype and lines incase a knockout didnt occur). I'm ...
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116 views

How to report the results of the Tukey HSD syntactically/formally correct?

For the ANOVA i use this form: F(2, 1279) = 6.15, p = .002, w^2 = .010. Let's say i did some post hoc testing and the result is this: ...
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25 views

How to properly evalulate data from multiple Likert scale surveys for multiple groups

A questionnaire was sent at several times T(1,2,3,4) to 3 groups G(A,B,C). Now, for each question i would like to find out whether or not: in the course of time the results have changed the results ...
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15 views

How to interpret Tukey-post hoc results for two explanatory variables in a multiple model?

I've fitted a multiple linear model with three explanatory variables. No interactions were found but the effect of two of them (Time and Salt concentration) were found to be statistically significant (...
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1answer
54 views

Anova of a mixed effect model (lmr) shows no significant interaction while tukey (emmeans) does?

I have run a linear mixed-effects model using lmer package. I'm using year sampled (1990s or 2017), field(1967 or 1984), and treatment (open or closed) to determine differences in native herbaceous ...
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142 views

Interpreting a Tukey - Kramer Confidence Interval Plot

In order to see if any statistically significant differences in the means of 4 particular diets exist, a post-hoc test is conducted i.e. Tukey – Kramer. Could someone please explain to me the plot ...
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108 views

Using pairwise comparison on gls object with heterogeneity of variances?

I'm comparing total yield from fields under 5 different treatments. As you can see, the variance differed between the treatments (diagnostics from lm() fit): So I ...
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1answer
47 views

How to conclude that all group means are different?

Suppose I have groups $G_1$ to $G_n$ with sample means of the variable of interest $m_1$ to $m_n$ respectively and sample variances $s_1^2$ to $s_n^2$. What tests can I perform to conclude that the ...
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1answer
135 views

What post-hoc analysis should I use following a two-way ANCOVA with factor, integer and numeric variables?

I ran a two-way ANCOVA on the data below, in r-studio, to determine whether pupal weights Pupal.wt were affected by caterpillars' diet ...
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292 views

Pairwise comparisons after ANOVA with Tukey and Bonferroni methods in r

The built-in functions TukeyHSD and LSD.test from R perform pairwise comparisons. In order to maintain the type I error, the significance level $0.05$ is divided by the number of comparisons $k$. Do ...
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1answer
82 views

How to show specific results in R using Tukey test?

I have a question about showing specific results in R. I am using a linear mixed model and checking the stats between each condition (adding 1, then adding 2, then adding 3...) in a repeated test, ...
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27 views

Simple GLM analysis on Springtail Community Dynamics: determining which variables affect Abundance

I'm looking at Springtail community analysis and want to see what, if any, affect Litter Type (LT), Site Type (ST), and Sampling Day (SD) have on springtail abundance. LT and ST both have 3 factors ...
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1answer
72 views

Adjusting p-values for multiple ANOVAs

I am performing multiple (around 40) multi-way ANOVAs on a dataset, one for each outcome variable. There are three factors involved: cohort, pre/post, and tissue type. For each outcome variable, I ...
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1answer
129 views

Which is right to perform a Tukey post hoc in R? [closed]

I know 3 ways to perform a Tukey post-hoc test in R and the results are a little different. Initially, I performed a two-way anova ...
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1answer
82 views

Tukey-Kramer or Nemenyi following Friedman

I previously asked a question here after discovering an option by MATLAB to run Tukey-Kramer for multiple comparison multcompare following Friedman test and many ...
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0answers
30 views

T-tests vs multiple comparison tests vs bonferroni in ANOVA?

I'm taking a course in experiment design and I'm having a hard time grasping the comparative usefulness of t-tests, multiple compariseon tests and bonferroni methods. I understand that in using ...
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87 views

What is the point in reporting the z statistic of a z-test?

In my field some authors report the z statistic of a z-test in a generalised linear model and others do not. Does reporting the z statistic serve any purpose if the p value of a z-test or of a post-...
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418 views

Two way ANOVA and post hoc test

I performed a two way ANOVA over a test set. My two nominal variables are treatment and clone. My outcome variable is area. ...
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122 views

ANOVA and tukey test on categorical variables

I have a data frame like the one below, I want to apply an anova test and tukey post hoc test analysis. ...
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41 views

A question about Tukey HSD test

Does Tukey comparison in glht/multcomp package in R refers to Tukey HSD test? Can I use the Tukey HSD test (for multiple comparisons) after applying the Robust technique (Such as Robust Anova, Robust ...
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1answer
66 views

How to state my model in R in words (linear mixed effect model, general linear hypothesis, Tukey, Benjamini Hochberg)

I have a dataset that has four treatment groups (AX, AY, BX, BY). I am trying to determine if there is a significant difference in a response variable (Length) between any of these four treatment ...
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1answer
372 views

Tukey HSD plot_simultaneous - how does it work?

I have performed a Tukey HSD in Python. I am not sure what values are plotted when using the .plot_simultaneous() command (see statsmodels documentation). The resulting plot is: I am wondering: how ...
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1answer
119 views

Are the results of my paired tests false positive?

I am dealing with a strange situation which I hope you can come up with a solution. I have 3 pared group(n=7 for each) which I tried to see if they are significantly difference and if so, in which ...
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1answer
120 views

How do I perform an ANCOVA ? (master thesis deadline) [closed]

My dataset consists of several morphological measurements for 5 island populations of a certain lizard species. I want to test for each population if there is a significant difference in the ...
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2answers
449 views

Post hoc test for Friedman test

I am running a Friedman test for my non-Gaussian data, on MATLAB. However, I am confused about the post hoc test to choose. Two concerns: (1) MATLAB's multcompare ...
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1answer
588 views

R Tukey HSD Anova: Anova significant, Tukey not? [duplicate]

i created a simple anova with three groups in R and get a significant Result. After that i do a Tukey HSD Test and now nothing is significant. How can that be? Pr(>F): 0.0316 Group | p adj 1 - 2 ...
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1answer
971 views

What are the (practical) differences between Tukey's HSD and the Dunn-Sidak correction procedures?

I have a data set with three groups, one of which is a control and the other two groups have been administered either a moderate or a high dose of a drug. The data are not normally or log-normally ...
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77 views

Tukey's alternatives!

I have 10 independent groups and I need to know which one is significantly different than others. I am planning to use One-way ANOVA then multi-comparison test. I used Tukey's test but it always ...
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2answers
274 views

Differing p-values car::Anova, anova & post hoc in logistic regression

I am currently working with a logistic model in R and I have a question regarding the p-values that I get from different types of tests. Since I have separation in my data (caused by X) I use the ...
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1answer
553 views

Which one to choose Type-I, Type-II, or Type-III ANOVA? [duplicate]

I don't understand what the difference is between TypeI and TypeIII? Since my background is not very mathematics, it's very difficult for me to understand this mathematical notation; Type I SS: SS(A) ...
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189 views

Power analysis for one way anova with post hoc Tukey?

I have an experiment in which I'm doing, among other things, a One way Anova with one dependent variable and 5 groups. After the ANOVA i'm doing Tukey's post hoc to test for differences between groups....
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1answer
1k views

Why do planned comparisons and post-hoc tests differ?

I conducted a three-way independent ANOVA. I manipulated the sound of my stimulus to be 1: congruent (KON), 2: incongruent (INK) and 3: no sound at all (control condition). One of my planned ...
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1answer
111 views

Comparing different treatments using logistic regression

I have some data on testing different pesticides on insects. I have applied different concentrations and different pesticides (total 11 treatments) for 24 hours, and have 6 different data points. I'm ...
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1answer
75 views

Adjust for multiple comparisons in several mixed models

I am fitting several generalized mixed models with binomial family to model proportions data(dependent variable) and 3 factors.The data looks like this: Sample Day ligand Condition Conc1 Conc2 .... ...
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1answer
256 views

Interpreting ANOVA, Tukey, Linear Mixed-Effects Results

I am trying to follow the work of a scientist who compared two factors (A and B) each with two levels. The general output from R appears as follows: ...
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1answer
82 views

Why “Honestly” in Tukey's Honestly Significant Difference (HSD)?

Why is the word "Honestly" in "Tukey's Honestly Significant Difference"? It seems unusual. Most statistical procedures are developed with the intent to give an "honest" answer. Why is that word ...
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1answer
2k views

Post Hoc Pairwise Comparison of Interaction in Mixed Effects (lmer) Model

I have searched other posts and textbooks and found numerous variations of the pairwise comparisions for my mixed effects model using code from the multicomp ...
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3answers
78 views

Is this an example of a multiple comparisons problem?

I am conducting a comprehensive research determining the effect of 3 independent variables on the metabolic rate of an organism. However, the set-up of my data analysis leads me to believe that I ...
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1answer
1k views

Tukey with interaction and extracting letters in multcomp

I've seen similar questions posted elsewhere with no answer, so I thought I'd put this out into the CrossValidated universe. I am attempting to do a Tukey's post-hoc test on a model that has an ...
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1answer
90 views

Possible to have insignificance when two groups have non-overlapping 95% CI for Tukey test?

I am comparing three group means (95% CI), as following: A (n=248) B (n=1000) C (n=102) 1.3 (0.6-2.1) 3.9 (3.1-4.7) 2.5 (1.2-3.9) There ...
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29 views

how to find which row is significantly different

I have a data which looks like this ...
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1answer
324 views

One-way ANOVA, clustering levels using Tukey Kramer HSD

Suppose I am doing a one-way fixed effect ANOVA on an unbalanced data set. Let the number of levels of the one way factor be "a". Suppose the omnibus null hypothesis is rejected. So I do a post hoc ...
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108 views

Should I use post-hoc tukey HSD or some other test for pairwise comparisons of a factor on a zero-inflated negative binomial mixed model (ZINB)?

I ran a zero-inflated negative binomial mixed model (ZINB) and now have a statistically significant factor (recording type, either NOCA, BCCH, or Human). To assess the differences between these three ...