### Differences due to type I/II/III sums The order is *not* important for the summary of the linear model (which is based on t-tests that don't change). You can see this in your output which is the same. However when you do an ANOVA then you might get different results depending on the order (this happens for type I sums) > anova(lm(a~c+b+d)) Analysis of Variance Table Response: a Df Sum Sq Mean Sq F value Pr(>F) c 1 82067 82067 3412.9019 < 2.2e-16 *** b 1 494 494 20.5397 1.683e-05 *** d 1 77 77 3.1872 0.07738 . Residuals 96 2308 24 --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 > anova(lm(a~b+c+d)) Analysis of Variance Table Response: a Df Sum Sq Mean Sq F value Pr(>F) b 1 82146 82146 3416.2075 < 2.2e-16 *** c 1 414 414 17.2341 7.155e-05 *** d 1 77 77 3.1872 0.07738 . Residuals 96 2308 24 --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 > Note the different p-values for the factors b and c. The reason is that ANOVA is a comparison of models and there are different ways to interpret this comparison (see [type I/II/III sums][1]). The standard anova function is performing the models in a cascading way, dropping terms one by one starting from the back. Those are type I sums It goes a bit like this (but slightly different F-scores because the degrees of freedom are computed differently) anova(lm(a~1+b+c), lm(a~1+b+c+d)) # testing the effect of d anova(lm(a~1+b ), lm(a~1+b+c )) # testing the effect of c anova(lm(a~1 ), lm(a~1+b )) # testing the effect of b The t-scores and the related p-values (from the summary of the `lm` function) relate to the F-test/ANOVA *in the case of type III sums*, which is dropping terms relative to the full model (and that is why the order doesn't matter for the t-test) anova(lm(a~1+b+c), lm(a~1+b+c+d)) # testing the effect of d anova(lm(a~1+b+d), lm(a~1+b+c+d)) # testing the effect of c anova(lm(a~1+c+d), lm(a~1+b+c+d)) # testing the effect of b This can also be done with the `drop1` function > drop1(lm(a~b+c+d), test = "F") Single term deletions Model: a ~ b + c + d Df Sum of Sq RSS AIC F value Pr(>F) <none> 2308.4 321.92 b 1 232.725 2541.2 329.52 9.6783 0.002456 ** c 1 147.721 2456.2 326.12 6.1433 0.014937 * d 1 76.639 2385.1 323.18 3.1872 0.077377 . --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 ### Differences due to the position of the intercept In the [referenced question][2] the reason for the impact of the order is due to the position of the intercept. [1]: https://stats.stackexchange.com/search?q=type%20sums [2]: https://stats.stackexchange.com/questions/63189/order-of-variables-in-r-lm-model