[![Lime explanatition as example][1]][1] [1]: https://i.sstatic.net/xF2za.png On the picture above you can see prediction probabilities. In this case it shows 100% poisonous. However, on next two figures it shows that there is actually small probability of other class (with feature gill_size, blue-colored). What is the reason behind this inconsistency? Picture from http://pythondata.com/local-interpretable-model-agnostic-explanations-lime-python/