Search Results
Search type | Search syntax |
---|---|
Tags | [tag] |
Exact | "words here" |
Author |
user:1234 user:me (yours) |
Score |
score:3 (3+) score:0 (none) |
Answers |
answers:3 (3+) answers:0 (none) isaccepted:yes hasaccepted:no inquestion:1234 |
Views | views:250 |
Code | code:"if (foo != bar)" |
Sections |
title:apples body:"apples oranges" |
URL | url:"*.example.com" |
Saves | in:saves |
Status |
closed:yes duplicate:no migrated:no wiki:no |
Types |
is:question is:answer |
Exclude |
-[tag] -apples |
For more details on advanced search visit our help page |
Use this tag for any *on-topic* question that (a) involves `R` either as a critical part of the question or expected answer, & (b) is not *just* about how to use `R`.
106
votes
Accepted
How should tiny $p$-values be reported? (and why does R put a minimum on 2.22e-16?)
If you were to specify sufficient information about the exact circumstances (e.g. it's a regression, with this much nonlinearity, that amount of variation in this independent variable, this kind and amount …
58
votes
Accepted
Is there any difference between lm and glm for the gaussian family of glm?
This allows you to fit particular forms of nonlinear relationship between $y$ (or rather its conditional mean) and the $x$-variables; while you can do this in nls as well, there's no need for starting … So - in relation to the title question - you can fit a substantially wider variety of Gaussian models with a GLM than with regression. …
55
votes
Why is nls() giving me "singular gradient matrix at initial parameter estimates" errors?
regression model
model: cost.per.car ~ a * exp(b * reductions) + c
data: q24
a b c
0.003289 0.126805 48.487386
residual sum-of-squares: 2243
Number of iterations to … In some circumstances, a sequence of nonlinear fits is made where you can expect the solutions to change slowly. …
55
votes
Accepted
How to find a good fit for semi-sinusoidal model in R?
While the linear model approach discussed here is simple to use, one advantage of @COOLSerdash's nonlinear regression approach is that it can deal with a much wider range of situations - you don't have … to change much before you're in a situation where linear regression is no longer suitable but nonlinear least-squares may still be used (having an unknown period would be one such case). …
47
votes
Accepted
Setting knots in natural cubic splines in R
How to specify the knots in R
The ns function generates a natural regression spline basis given an input vector. …
35
votes
Accepted
Transforming variables for multiple regression in R
John Fox's book An R companion to applied regression is an excellent ressource on applied regression modelling with R. … Modelling nonlinear relationships
Two quite flexible methods to fit nonlinear relationships are fractional polynomials and splines. …
30
votes
Accepted
Linear regression with slope constraint
I want to perform ... linear regression in R. ... I would like the slope to be inside an interval, let's say, between 1.4 and 1.6. How can this be done?
(i) Simple way:
fit the regression. … So lets use the constrained regression in nls:
nls(y~a+b*x,algorithm="port",
start=c(a=0,b=1.5),lower=c(a=-Inf,b=1.4),upper=c(a=Inf,b=1.6))
Nonlinear regression model
model: y ~ a + b * x
data …
27
votes
Accepted
Identical coefficients estimated in Poisson vs Quasi-Poisson model
My general approach to this is graphical exploration of the raw data and regression diagnostics ... …
26
votes
Fitting known equation to data
The simplest R function to do this is nls. (The R code I used is at the end of the answer.) … R code
In terms of R code, it was simplest to define a general function for your temperature-response curve:
trcFunc <- function(x,z,a,b){((a-x)/(a-z))*((x/z)^(z/b))}
then give specific values for …
21
votes
Accepted
What diagnostic plots exists for quantile regression?
A good compromise is to allow all main effects to be nonlinear using regression splines such as restricted cubic splines (natural splines). … For example, we can assess the combined contributions of nonlinear or interaction terms or both. An example follows, using the R rms and quantreg packages. …
19
votes
Accepted
Linear regression not fitting well
It has a low $R^2$, indicating a lot of scatter and strong "regression to the mean": the regression line has a smaller slope than the major axis of this elliptical point cloud. … The same fit is plotted: now it looks curved due to the nonlinear way in which log odds are converted to probabilities. …
18
votes
Accepted
Can someone shed light on linear vs. nonlinear mixed-effects?
There are several distinctions between linear and nonlinear regression models, but the primary mathematical one is that linear models are linear in the parameters, whereas nonlinear models are nonlinear … Pinheiro and Bates (2000, pp. 284-285), authors of the nlme R package, elegantly described the more substantive considerations in model selection:
When choosing a regression model to describe how a …
16
votes
Accepted
MDS on large dataset (R or Python)
regression method. … I recall seeing a couple papers describe this kind of approach as a way to perform out-of-sample generalization for nonlinear dimensionality reduction algorithms in general. …
16
votes
Calculating $R^2$ in mixed models using Nakagawa & Schielzeth's (2013) R2glmm method
I am answering by pasting Douglas Bates's reply in the R-Sig-ME mailing list, on 17 Dec 2014 on the question of how to calculate an $R^2$ statistic for generalized linear mixed models, which I believe … The proposal was to examine I think 9 different formulas that
could be considered ways of computing an R2 for a nonlinear regression
model to decide which one was "best". …
14
votes
Accepted
Simple Log regression model in R
In my opinion, it's a good strategy to transform your data before performing linear regression model as your data show good log relation:
> #generating the data
> n=500
> x <- 1:n
> set.seed(10)
> y < … : 0.5236, Adjusted R-squared: 0.5226
F-statistic: 547.3 on 1 and 498 DF, p-value: < 2.2e-16
>
> coef(fit)
(Intercept) log(x)
-6.469869 1.087886
>
> #plot
> x=seq(from=1,to=n,length.out …