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ANOVA stands for ANalysis Of VAriance, a statistical model and set of procedures for comparing multiple group means. The independent variables in an ANOVA model are categorical, but an ANOVA table can be used to test continuous variables as well.
11
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2
answers
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Why does adding more terms into a linear model always increase the r-squared value?
Many statistics textbooks state that adding more terms into a linear model always reduces the sum of squares and in turn increases the r-squared value. This has led to the use of the adjusted r-square …
7
votes
2
answers
5k
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Proportion of variance in dependent variable accounted for by predictors in a mixed effects ...
Let say I've ran this linear regression:
lm_mtcars <- lm(mpg ~ wt + vs, mtcars)
I can use anova() to see the amount of variance in the dependent variable accounted for by the two predictors:
anova( … (Intr) wt
wt -0.846
vs -0.272 0.006
The variance accounted for by each fixed effect now drops because the random intercept for cyl is now accounting for some of the variance in mpg:
anova …
2
votes
3
answers
708
views
Test for effect of groups in a mixed effects model
I tried this but it threw an error:
anova(mtcars_mixed_effects, mtcars_lm)
(please disregard the fact that cyl only has three groups, I'm just using one of R's built in datasets to make question reprodicible …
2
votes
2
answers
16k
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Calculating sum of squares between groups
I have carried out this ANOVA:
summary(aov(drat ~ cyl, mtcars))
Df Sum Sq Mean Sq F value Pr(>F)
cyl 1 4.342 4.342 28.81 8.24e-06 ***
Residuals 30 4.521 0.151 …
5
votes
2
answers
9k
views
How to compute $\eta^2$ in ANOVA by hand?
This R code outputs the eta squared from an ANOVA:
y <- c(rnorm(30, 3), rnorm(30, 4), rnorm(30, 5))
x <- sort(rep(paste("treatment", 1:3), 30))
xy <- data.frame(x,y)
xyaov <- aov(y ~ x, xy) …
2
votes
3
answers
3k
views
ANOVA sum of squares between groups
I'm trying to get an intuitive understanding of why the sum of squares between groups needs to be multiplied by the number of observations within each group. Using the iris dataset in R as an example, …
1
vote
1
answer
11k
views
Degrees of freedom ANOVA table for regression
I've calculated the following ANOVA table for a linear regression in R:
anova(lm(mpg ~ drat, mtcars))
Analysis of Variance Table
Response: mpg
Df Sum Sq Mean Sq F value Pr(>F)
drat 1 522.48 522.48 …
4
votes
2
answers
1k
views
Rationale behind using ANOVA to compare means
Instead, an ANOVA is advised.
But if 21 t-tests were performed using these data and because there are only 7 groups, some of the same data would be used in each test. …
3
votes
2
answers
5k
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calculating ANOVA 'by hand'
I've calculated an ANOVA in R using the aov() function, then calculated it semi-manually using my own code. … create fake data
set.seed(50)
x = data.frame(length=rnorm(9),
site = c(rep('a', 3),
rep('b', 3),
rep('c', 3)), stringsAsFactors=F)
# ANOVA …
7
votes
2
answers
8k
views
Difference between a 2 factor ANOVA and mixed effects model
The first model is a 2 factor ANOVA:
summary(aov(angle ~ temperature + recipe, cake))
Df Sum Sq Mean Sq F value Pr(>F)
temperature 5 2100 420.1 6.918 4.37e-06 ***
recipe … 1.315
Correlation of Fixed Effects:
(Intr) recipB
recipeB -0.438
recipeC -0.438 0.500
Is someone able to provide a summary of what the mixed effect model has done differently to the ANOVA …
4
votes
2
answers
944
views
Should a mixed effects model be used?
Should a type of mixed effects model be applied, or would a two-way ANOVA be more appropriate? If a mixed effects model is needed, then what type? …
4
votes
1
answer
195
views
ANOVA using day numbers
I am considering carrying out an ANOVA to test to see if the date of the maximum count is different among sites. … Example R code:
summary(aov(day.number ~ site, data=df))
Is an ANOVA appropriate here? Is there a better way of looking at differences in day number of maximum count among sites? …