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Use this tag for any *on-topic* question that (a) involves `R` either as a critical part of the question or expected answer, & (b) is not *just* about how to use `R`.
1
vote
Proper way to evaluate models fitted to standardized data
You are operating on the mtcars dataset, which has 32 observations and 11 variables (you are predicting mpg using the other 10 variables):
dim(mtcars)
# [1] 32 11
In your training/testing set split …
12
votes
Accepted
How to calculate the p.value of an odds ratio in R?
You can use Fisher's exact test, which inputs a contingency table and outputs a p-value, with a null hypothesis that the odds ratio is 1 and an alternative hypothesis that the odds ratio is not equal …
2
votes
Accepted
Joint expectations in Python or R
For instance, here is the R code to simulate the expected value of $X^2e^Y$ with $\rho = 0.2$ using 1 million samples:
# Parameters for calculation
f <- function(x) x^2
g <- function(y) exp(y)
rho <- …
9
votes
Accepted
Does runif (R) ever return 0/1
Instead, as I understand it your question is specifically about R, and whether runif will return 0 or 1 due to the finite numerical precision of your computer. We can read the following from ? … So we conclude that drawing from the standard uniform distribution in R using runif will never return 0 or 1. …
2
votes
data analysis about data clustering by vector correlation distance
It seems like you want to use a distance metric based on correlation, so you could assign a "dissimilarity score" between pairs of points based on correlation; I'll use 1-cor(a, b) to compute the diss …
4
votes
R: Box-plot on log scale vs. log-transforming *then* creating box-plot: Don't get same result
From ?boxplot, you can read:
range
this determines how far the plot whiskers extend out from the
box. If range is positive, the whiskers extend to the most extreme
data point which is no …
6
votes
Discrepancy in Cholesky decomposition matrix from variance covariance matrix obtained in Sta...
Meanwhile, from the R documentation, chol returns an upper triangular matrix $M$ such that $X = M'M$ for input matrix $X$. From this we would expect them to be transposes of each other. … However, the outputs differ even more significantly because R and Stata have flipped the variable ordering -- the R function lists intercept first and expense second, while Stata lists expense first and …
15
votes
Accepted
Predicted probability values from Logistic regression are negative
From ?predict.glm, you can read that by default the type of prediction will be the link function (log odds for logistic regression) instead of probabilities.
You can get predicted probabilities with …
4
votes
plotting a factorial function in R
Another way to write this by cancellation would be:
$$
P(D|N) = \frac{60\times 59\times\ldots\times 51\times(N-60)\times(N-61)\times\ldots\times(N-149)}{N\times(N-1)\times(N-99)}
$$
Note that the nu …
7
votes
Accepted
Calculating MAPE
From the name Mean Absolute Percentage Error, there needs to be an absolute value in the calculation of MAPE:
rowMeans(abs((actual-predicted)/actual) * 100)
This matches the formula for MAPE at, fo …
1
vote
Accepted
glmer.nb does not converge when one variable is included in the model
The warning messages you received are informative here:
2: Some predictor variables are on very different scales: consider
rescaling
So it seems like a good approach is to rescale some variabl …