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A class of linear methods for modeling the relationship between two groups of variables, X and Y. Includes PLS regression.

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There are many things to say: Firstly, in my opinion, PLSR is good for data with many (ie 100+) variables. Since it provides a discrete type of regularization, the number of components can be relevan …
answered Sep 17 '17 by theGD
2
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Assuming your independent variable matrix is $m\times n$, that you have $m$ observations and $n$ variables. For each PLS component (AKA latent variable), you get a loading vector ($n \times 1$), so f …
answered May 6 by theGD
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You are right, generally RMSECV is supposed to decrease first, followed by stabilization or increment or very slow decrement. If you are observing a steady increment of RMSECV starting from first comp …
answered Feb 10 '18 by theGD
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Yes. PLS-DA is basically PLS regression where Y consists of categorical variables. Here is an example of Y matrix with 3 groups each consists of 2 samples (the first row is headers and is not involved …
answered Jan 26 '17 by theGD
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You can not get a single explained variance for each component for LOO and k-fold cross-validation since one has to create a PLS model from scratch for each time a sample is left out in LOO or for eac …
answered Aug 24 '17 by theGD
2
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1answer
In Matlab's plsregress function and in many other statistic toolboxes, there is a BETA vector returned that simplyfies the regression problem to(excluding the intercept term in BETA): Y=X*BETA In a …
asked May 11 '16 by theGD
2
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You are referring to NIPALS algorithm. In that algorithm, as the paper you referred shows, you deflate $X$ block while building up $Y$ block. So you don't have a single $W$ matrix that can be applied …
answered Jun 19 '17 by theGD
3
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Short answer: If you choose h number of components (Latent Variables, LVs) for your modelling, then the VIP scores and regression coefficients to look at are for h LVs. Long Answer: A full scenario: …
answered Nov 6 '17 by theGD
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I believe taking average of your samples or not will not change your results significantly. A usual Mid-IR spectrum contains 2000+ variables (with the resolution of the instruments in my lab, at least …
answered Jun 22 '17 by theGD
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Just throwing some ideas: Let's say your categorical variable whose name is Cat has 4 levels: A, B, C, D. And you have 1 continuous variable whose name is Cont I would create response matrix to be u …
answered Nov 6 '17 by theGD
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0answers
I have a very big data which have 210k variables and 90 samples. Among the supervised classification methods, partial least squares discriminant analysis(PLS-DA) provided me the best separation. Howev …
asked Aug 16 '16 by theGD
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Yes. One of the advantages of PLSR is its potential to overcome multicollinearity problem. Both in PCR and PLSR the projection provides projection of original data to smaller dimensions (If no variab …
answered Jan 26 '17 by theGD
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0answers
What is the point of using predicted residual sum of squares (PRESS) instead of root-mean-squared-error-of-cross-validation(RMSECV)? In many books, especially in the area of chemometrics, the authors …
asked Nov 1 '18 by theGD
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No, they are not the same. In PLS-DA, the Y matrix consists of categorical variables of 0 and 1 where each column represents a class. To illusturate, let's assume you have 6 samples where each 2 samp …
answered Dec 5 '16 by theGD
2
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Firstly, unlike PCA, "the sum of variances of all PLS components is normally less than 100%".(a good explanation by @amoeba) Also, since the aim of PLS models is usually to build a predictive model, i …
answered Aug 4 '17 by theGD

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