I have run a glm to look at the effects of several environementalenvironmental variables (x variables) on the numbers of bacteria in a soil sample (y variable):
sludgemodel <- glm(cfu.g ~ days + pH + temperature, family = gaussian (link=identity), na.action = na.exclude, data = sludgeqpcr)
sludgemodel <- glm(cfu.g ~ days + pH + temperature, family = gaussian (link=identity),
na.action = na.exclude, data = sludgeqpcr)
I then plotted the model to check the model assumptions:
plot(sludgemodel)
plot(sludgemodel)
The plots all look okay except the residuals vs fitted plot which does not have a random distribution but more of a curved distribution.
Should I transform the data or use a different error/link function? I am very new to R and statistics so advice would be appreciated.