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May 12, 2021 at 15:04 vote accept ari6739
May 11, 2021 at 19:58 comment added BruceET In bootstrapping it's often enough to re-sample 2000 times. With permutation tests where I know the answer from other methods, I have often found there is improvement up to about 100,000 iterations (and the extra running time is seldom an issue).
May 11, 2021 at 14:14 comment added Dave "Never write simulation code with 500 in it. Always write n <- 500 and use n for the rest." I second this advice.
May 11, 2021 at 14:07 comment added ari6739 sample.permut is a vector of correlations between tree1 and tree2 with permuted labels
May 11, 2021 at 13:58 history answered Bernhard CC BY-SA 4.0