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Jun 3, 2021 at 23:45 comment added Aksakal No, in your case intensity is exponentially decaying therefore the variance will not be equal to mean
Jun 3, 2021 at 16:31 comment added Epideme 1 other thing I wanted to ask... In a precise edit you mentioned it being problematic the mean and variance weren't approximately equal, does this make the graph /fitting above with the GLM w Poisson family less valid? I'm also not completely clear on if it uses a log link or not, I think it does, but I'm still reading through the link, and GLMs are new to me
Jun 2, 2021 at 0:32 history edited Aksakal CC BY-SA 4.0
explained assumption of constant decay during 15s
Jun 1, 2021 at 15:33 comment added Epideme Oh wow, you're not kidding about the long. I will set about reading that. Thank you.
Jun 1, 2021 at 15:32 comment added Aksakal dataquest.io/blog/tutorial-poisson-regression-in-r - painfully long explanation here
Jun 1, 2021 at 15:26 vote accept Epideme
Jun 1, 2021 at 15:26 comment added Epideme Okay, well... I guess that's good news, I can move on to being frustrated at the next thing. Thank you for such clear and helpful answers. What fitting method do the GLM w/Poisson actually use, do you know?
Jun 1, 2021 at 15:19 comment added Aksakal The weighting $\pm 1$ will not work for your case. however, your fitting routine already uses Poisson so you are good here. Yes, the output agrees with mine, of course. GLS with Poisson family means that it's all taken care of
Jun 1, 2021 at 15:15 comment added Epideme I see. I've added my graph which uses a Non-Linear Model Fit from Mathematica for Poisson distributions, but I'm not too sure what the fitting method is. I think it might be Least squares, but not certain. However there's no weighting applied, and I should probably add the +/- 1 on each point. I've just seen you've posted your result, so I'll change my question to do you think this seems valid
Jun 1, 2021 at 15:11 history edited Aksakal CC BY-SA 4.0
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Jun 1, 2021 at 15:06 history edited Aksakal CC BY-SA 4.0
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Jun 1, 2021 at 15:01 comment added Aksakal ideally, you want to come up with MLE of Poisson distribution with decaying intensity. however, running a simple nonlinear regression on your data with $1/\hat N$ as weights, and assuming 18s intervals (with 3s mute) I get almost exactly 150s half life
Jun 1, 2021 at 14:45 comment added Aksakal yes 900s interval is very short relative to half life of 150s. I think in your case WLS should work fine when using $1/N$ as the weight
Jun 1, 2021 at 14:42 comment added Epideme I see, so uncertainty in a single measurement would be (Taking 74 as the example): 74 +/- 1. And the uncertainty in the counts per second would be 74 +/-Sqrt(74)/(15). Given that you mentioned it not meeting the requirements for a poisson distribution, is there a better way of fitting this you would recommend? The data set does show exponential decay. The half-life is 150s, the experiment is about 900s - would that be considered relatively short enough? My end goal is trying to fit the results validly, and find the half life and uncertainty to see if they agree with the 150s reference
Jun 1, 2021 at 14:37 history edited Aksakal CC BY-SA 4.0
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Jun 1, 2021 at 14:31 history edited Aksakal CC BY-SA 4.0
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Jun 1, 2021 at 14:24 history answered Aksakal CC BY-SA 4.0