this is how they did it: got the percentile of log transformed data, then applied exponential to it. what they call geomean is simply a mean of long transformed data.
- your transformed variable's 97.5 percentile is $-0.047+1.96*0.125\approx 0.198$
- exponentiate it to get the answer $10^{0.198}\approx 1.578$
logarithm is a monotonic function so if you obtain percentiles analytically then the order of operations (percentile vs log) doesn't matter. when you deal with empirical estimation, then the results depend on the order of operations, as you saw. in this case your source seems to think that the data comes from lognormal distribution. if that's the case, then what they did is appropriate. they are using parametric approach to percentiles. it's fairly common.