Although this question is posted long ago, I feel like I should answer it since I was struggling to make sense of it for a while last night.
SURE as you mentioned represent Stein's Unbiased Risk Estimate:
In the equation, there are 3 parts:
The first part is d which as mentioned in the paper is the dimension of data and if we are talking about time-series data, the dimension is effective the length of data(which OP already pointed out)
The second part is 2.#{i: |x(i)| <= t} is simply 2 times the number of elements that is smaller or equal to t. In python, np.sum((np.abs(y)<=t)).
The third part is simply saying do a min check for every element in y which is min(abs(y(i)),t). Then square this result and sum it up.
Technically, you should choose the value of t which produces the smallest SURE.