Skip to main content

PCA and varimax references?

After doing PCA it is common that the first component describes the largest part of variability. This is important in i.e. study of body measurements where it is commonly known (Jolliffe, 2002) that PC1 axis captures size variation. My question is whether PCA scores after varimax rotation retain the same properties or are they different as mentioned in this topic?

Since I need PCA scores for further statistical analyses I am wondering if varimax is needed and does it in fact disrupt the representation of real sample variability so that individual scores on rotated axes are uninformative or lead to miss-interpretation of reality?

Also could someone suggest some other references on this topic?