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BUGS is an acronym for Bayesian inference Using Gibbs Sampling; BUGS is also a software package for doing this. Use for all versions of BUGS, also WINBUGS and OpenBUGS.

6 votes
2 answers
8k views

Thinning chains in BUGS/JAGS

Hi I have a quick question about the details of running a model in JAGS and BUGS. Say I run a model with n.burnin=5000, n.iter=5000 and thin=2. …
user1375871's user avatar
4 votes
0 answers
1k views

How to Implement an Empirical Bayes Analysis in BUGS/JAGS/Stan

My data is a set of $N$ observations $y_i$. I would like to estimate $\mu$ and $\sigma$ in the following model: $y_i \sim \mathrm{Normal}(\theta, \sigma)$ $\theta \sim \mathrm{Normal}(\mu, \frac{\s …
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1 vote
1 answer
1k views

CODA gleman.diag, Error in chol.default(W): [closed]

I'd like to use gelman.diag for an MCMC chain I ran in JAGS. It is very large, so I can't provide it. The chain contains several MVN distributions, and I use a wishart prior on the precision matrix. …
user1375871's user avatar