If I understand your problem, this can happen when the intra-cluster correlations are negative. See Stata FAQ for the therapist version with some intuition.
Edit:
I think Stas is right about the deeper issue. I was too hasty. Here's my attempt to replicate this with a dataset of pharmacy visits by 27,766 Vietnamese villagers that are nested in 5,740 households in 194 villages (data are from Cameron and Trivedi). I could not find a public dataset where the clustered errors were smaller, but I think this illustrates the main point. I will treat pharmacy visits as continuous, though they clearly are not.
First, we set up the data:
. use "http://cameron.econ.ucdavis.edu/mmabook/vietnam_ex2.dta", clear
. egen hh=group(lnhhinc)
(1 missing value generated)
. bys hh: gen person = _n
. xtset hh person
panel variable: hh (unbalanced)
time variable: person, 1 to 19
delta: 1 unit
. xtdes
hh: 1, 2, ..., 5740 n = 5740
person: 1, 2, ..., 19 T = 19
Delta(person) = 1 unit
Span(person) = 19 periods
(hh*person uniquely identifies each observation)
Distribution of T_i: min 5% 25% 50% 75% 95% max
1 2 4 5 6 8 19
(snip)
Now for the FE regression of visits on days sick:
. xtreg PHARVIS ILLDAYS, fe
Fixed-effects (within) regression Number of obs = 27765
Group variable: hh Number of groups = 5740
R-sq: within = 0.1145 Obs per group: min = 1
between = 0.1390 avg = 4.8
overall = 0.1257 max = 19
F(1,22024) = 2848.23
corr(u_i, Xb) = 0.0465 Prob > F = 0.0000
------------------------------------------------------------------------------
PHARVIS | Coef. Std. Err. t P>|t| [95% Conf. Interval]
-------------+----------------------------------------------------------------
ILLDAYS | .0788618 .0014777 53.37 0.000 .0759654 .0817581
_cons | .2906284 .0077221 37.64 0.000 .2754925 .3057643
-------------+----------------------------------------------------------------
sigma_u | .85814688
sigma_e | 1.085808
rho | .38447214 (fraction of variance due to u_i)
------------------------------------------------------------------------------
F test that all u_i=0: F(5739, 22024) = 2.35 Prob > F = 0.0000
Clustering on the panel variable inflates the errors:
. xtreg PHARVIS ILLDAYS, fe vce(cluster hh)
Fixed-effects (within) regression Number of obs = 27765
Group variable: hh Number of groups = 5740
R-sq: within = 0.1145 Obs per group: min = 1
between = 0.1390 avg = 4.8
overall = 0.1257 max = 19
F(1,5739) = 464.54
corr(u_i, Xb) = 0.0465 Prob > F = 0.0000
(Std. Err. adjusted for 5740 clusters in hh)
------------------------------------------------------------------------------
| Robust
PHARVIS | Coef. Std. Err. t P>|t| [95% Conf. Interval]
-------------+----------------------------------------------------------------
ILLDAYS | .0788618 .0036589 21.55 0.000 .0716889 .0860346
_cons | .2906284 .0102597 28.33 0.000 .2705154 .3107413
-------------+----------------------------------------------------------------
sigma_u | .85814688
sigma_e | 1.085808
rho | .38447214 (fraction of variance due to u_i)
------------------------------------------------------------------------------
Now I try this a non-panel approach. I am using areg
since Stata won't let me put in ~6K dummies.
. areg PHARVIS ILLDAYS, absorb(hh) vce(cluster hh)
Linear regression, absorbing indicators Number of obs = 27765
F( 1, 5739) = 368.52
Prob > F = 0.0000
R-squared = 0.4579
Adj R-squared = 0.3166
Root MSE = 1.0858
(Std. Err. adjusted for 5740 clusters in hh)
------------------------------------------------------------------------------
| Robust
PHARVIS | Coef. Std. Err. t P>|t| [95% Conf. Interval]
-------------+----------------------------------------------------------------
ILLDAYS | .0788618 .0041081 19.20 0.000 .0708084 .0869151
_cons | .2906284 .0115192 25.23 0.000 .2680464 .3132103
-------------+----------------------------------------------------------------
hh | absorbed (5740 categories)
Unfortunately, areg
obscures the thing you are interested in. If you use regress
and limit the sample so the number of HHs is reasonable, you will get the tiny standard errors for clusters with only 1 villager. This makes sense since the residual for such observations will be exactly zero. Here's an example:
. reg PHARVIS ILLDAYS i.hh if inrange(hh,1,100), cluster(hh)
Linear regression Number of obs = 219
F( 0, 99) = .
Prob > F = .
R-squared = 0.6473
Root MSE = .88177
(Std. Err. adjusted for 100 clusters in hh)
------------------------------------------------------------------------------
| Robust
PHARVIS | Coef. Std. Err. t P>|t| [95% Conf. Interval]
-------------+----------------------------------------------------------------
ILLDAYS | .0518095 .0314707 1.65 0.103 -.0106352 .1142542
|
hh |
2 | -1 1.84e-14 -5.4e+13 0.000 -1 -1
3 | .2590475 .1573536 1.65 0.103 -.0531762 .5712712
4 | .4662855 .2832365 1.65 0.103 -.0957171 1.028288
5 | 2.129524 .0786768 27.07 0.000 1.973412 2.285636
6 | 1 1.84e-14 5.4e+13 0.000 1 1
7 | -.585524 .2517657 -2.33 0.022 -1.085082 -.0859662
(snip)....
100 | -.8359366 .0996573 -8.39 0.000 -1.033678 -.6381949
|
_cons | .481905 .3147072 1.53 0.129 -.1425423 1.106352
------------------------------------------------------------------------------
Now I will cluster on the village, which inflates them some, as is expected, but still OK:
. reg PHARVIS ILLDAYS i.commune, cluster(commune)
Linear regression Number of obs = 27765
F( 0, 193) = .
Prob > F = .
R-squared = 0.1814
Root MSE = 1.1925
(Std. Err. adjusted for 194 clusters in commune)
------------------------------------------------------------------------------
| Robust
PHARVIS | Coef. Std. Err. t P>|t| [95% Conf. Interval]
-------------+----------------------------------------------------------------
ILLDAYS | .0840634 .0056375 14.91 0.000 .0729444 .0951823
|
commune |
2 | -.1885549 .012027 -15.68 0.000 -.2122761 -.1648337
(snip) ....
191 | .4646775 .0014571 318.91 0.000 .4618037 .4675514
192 | -.0020317 .0065782 -0.31 0.758 -.0150061 .0109427
193 | -.2444578 .0115522 -21.16 0.000 -.2672426 -.2216731
194 | .1917803 .0002288 838.33 0.000 .1913291 .1922315
|
_cons | .4371527 .0200739 21.78 0.000 .3975602 .4767452
------------------------------------------------------------------------------
If I drop all other regressors and estimate something like Stas suggests, I get the zero standard errors on the commune dummies:
. reg PHARVIS i.commune, cluster(commune)
Linear regression Number of obs = 27765
F( 0, 193) = .
Prob > F = .
R-squared = 0.0656
Root MSE = 1.274
(Std. Err. adjusted for 194 clusters in commune)
------------------------------------------------------------------------------
| Robust
PHARVIS | Coef. Std. Err. t P>|t| [95% Conf. Interval]
-------------+----------------------------------------------------------------
commune |
2 | -.0092138 1.72e-14 -5.4e+11 0.000 -.0092138 -.0092138
3 | -.2910319 1.72e-14 -1.7e+13 0.000 -.2910319 -.2910319
4 | -.3957457 1.72e-14 -2.3e+13 0.000 -.3957457 -.3957457
5 | -.4244865 1.72e-14 -2.5e+13 0.000 -.4244865 -.4244865
(snip) ....
191 | .4864051 1.72e-14 2.8e+13 0.000 .4864051 .4864051
192 | -.1001229 1.72e-14 -5.8e+12 0.000 -.1001229 -.1001229
193 | -.416719 1.72e-14 -2.4e+13 0.000 -.416719 -.416719
194 | .188369 1.72e-14 1.1e+13 0.000 .188369 .188369
|
_cons | .7364865 1.72e-14 4.3e+13 0.000 .7364865 .7364865
------------------------------------------------------------------------------