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I have two class data sets. I want to classify them using Convolution Neural Network. So Is it possible? Is there any build in functions available. I don't have any idea about CNN so any kind of help is welcome.

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Why not? I don't see any neural network (or any other machine learning classification technique) unable to classify two classes... You'll just need to adjust your output neutrons accordingly. I think this question can be improved once you read more about neural network.

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