Let's start by looking at a single pulse and figure out the distribution of the number of photons in that pulse that get through the filter. To do this, let $N$ denote the initial number of photons in the pulse and let $X$ denote the number of photons that make it through the filter. Then you have the model:
$$\begin{align}
N &\sim \text{Pois}(\lambda), \\[6pt]
X|N &\sim \text{Bin}(N,\theta). \\[6pt]
\end{align}$$
The marginal distribution of $X$ is obtained using the law of total probability, to wit:
$$\begin{align}
p_X(x) \equiv \mathbb{P}(X=x)
&= \sum_{n=0}^\infty \mathbb{P}(X=x|N=n) \cdot \mathbb{P}(N=n) \\[6pt]
&= \sum_{n=0}^\infty \text{Bin}(x|n,\theta) \cdot \text{Pois}(n|\lambda) \\[6pt]
&= \sum_{n=x}^\infty \frac{n!}{x! (n-x)!} \theta^x (1-\theta)^{n-x} \cdot \frac{\lambda^n}{n!} e^{-\lambda} \\[6pt]
&= \frac{(\theta \lambda)^x}{x!} e^{-\theta \lambda} \sum_{n=x}^\infty \frac{((1-\theta)\lambda)^{n-x}}{(n-x)!} e^{-(1-\theta)\lambda} \\[6pt]
&= \frac{(\theta \lambda)^x}{x!} e^{-\theta \lambda} \sum_{r=0}^\infty \frac{((1-\theta)\lambda)^r}{r!} e^{-(1-\theta)\lambda} \\[6pt]
&= \text{Pois}(x| \theta \lambda) \sum_{r=0}^\infty \text{Pois}(r| (1-\theta)\lambda) \\[12pt]
&= \text{Pois}(x| \theta \lambda). \\[6pt]
\end{align}$$
This gives us the marginal distribution $X \sim \text{Pois}(\theta \lambda)$ for the number of photons that make it through the filter in a single pulse. This is called "thinning" the Poisson variable/process --- it leads to another Poisson variable/process but with the mean parameter reduced proportionately to the thinning. The result shown here can also be proved using the generating functions for the distribution; see e.g., here.
Now suppose we have $k$ independent pulses of the same type (i.e., with the same parameters) and let $X_1,...,X_k \sim \text{Pois}(\theta \lambda)$ denote the number of photons that go through the filter from each of these pulses. Then the total number of photons that make it through the filter is:
$$S_k = X_1 + \cdots + X_k.$$
The marginal distribution of $S_k$ is a $k$-fold convolution of the $\text{Pois}(\theta \lambda)$ distribution, which is:
$$S_k \sim \text{Pois}(k \theta \lambda).$$
This is the distribution of the number of photons that make it through the filter from $k$ pulses with mean-photons $\lambda$ and filter penetration probability $\theta$.