I personally hate R markdown file / python notebook, since they mix code and results all together (expose unnecessary details / show pre-mature progress in exploration stage). But I noticed there are lots of people use this as their Integrated development environment.
What are the advantages of using it? Because the analysis / report can be automatically generated when data is refreshed? Also, is python Jupyter THE platform for python people machine learning? (instead of Eclipse or Pycharm)
I've used both R markdown as a student and Jupyter (with Python and Julia) in professional settings. The two approaches are somewhat different, but both have their merits. As for advantages, I would argue that both approaches:
Of course this doesn't mean these tools are appropriate for all kinds of reports. If you're writing an executive summary, these tools are probably not good for the approach. However, if you're task is more related to technical analysis reporting or sharing research, these tools are incredibly useful.
As for something being the platform for doing data science, machine learning, etc., the question is ill-posed. There are many good tools out there. Choose something that you can work with effectively and which feels like a good fit for the problem you're trying to solve. If you're doing analysis work, you want an environment that is geared toward that workflow. If you're doing software development work, you're probably looking for different things from your tools.
