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Guphadi
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Can eta squared be used for comparing effect size of a categorical (>2 categories) and continuous variable?

I have a linear model with both continuous and categorical (>2 categories) variables. I am aware of other statistics (e.g., AIC sum of weights and lmg from R package relaimpo) that can be used to compare relative influence of predictor variables, but for various reasons cannot be used for my situation. I calculated eta squared using R package heplots (function etasq). Below is a simplified version of my slightly more complex model:

SPS_Jn5$REGION <- as.factor(SPS_Jn5$REGION)

SPST1x <- lm(PINDX ~ FChange * PLAND_42 + REGION, data = SPS_Jn5)

I get the following output for eta squared:

etasq(SPST1x)

                 Partial eta^2
FChange            0.007043574
PLAND_42           0.158118552
REGION             0.148318074
FChange:PLAND_42   0.013788113
Residuals                   NA

However, I am not sure whether it is valid to use eta squared to compare categorical and continuous variables present in the same model, particularly because a categorical variable (with >2 categories) involves more than 1 degree of freedom. I searched online but could not find any documentation. This [post][1] states that using eta is not appropriate when ordinal and nominal data are present, but does not specifically answer my question. The R documentation for heplots does not talk about categorical variables.

I tried using eta squared by reassigning my categorical variable (REGION) as a continuous variable (the observations were region numbers so could be used as a continuous data). I got a different output:

etasq(SPST2x)
                 Partial eta^2
FChange             0.01788473
PLAND_42            0.18224738
REGION              0.07655448
FChange:PLAND_42    0.01962085
Residuals                   NA

Here the influence of my categorical variable is obviously low. Presumably, the function was able to recognize between a categorical and a continuous variable. However, this does not either support or reject the use of eta squared for models that have both categorical (specifically >2 categories) and continuous variables. I tried to study the codes for eta squared using getAnywhere(etasq.lm) but my knowledge is not sufficient to understand the details of the code. Thank you. [1]: Is ETA a good measure for computing the efect size between an ordinal and a nominal variable?

Guphadi
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