I am attempting to assess whether my explanatory variable of "startingpos" is best modelled via a quadratic regression model or a linear regression model. One way I can do this is to compute the models and assess their fit using the anova() function:
# example data
dat <- structure(list(FirstSteeringTime = c(0.3000240576829, 0.3833560075234,
0.4333325988244, 0.332885282886096, 0.349735018357208, 0.500228955489106,
0.33254630198401, 0.166676577506308, 0.400026140468498, 0.933583287728609,
0.366613128009007, 0.400152315016001, 0.466582308819014, 0.43335584150401,
0.516691111726999, 0.383459543097199, 0.483226482407986, 0.416576739631978,
0.783127987777988, 0.449786605031989, 0.283220203865, 0.416811581253,
0.383292920249005, 0.400114583392991, 0.18360026695899, 0.416630167609981,
0.500080141967999, 0.466509864102989, 0.183366330894984, 0.69996205708,
0.833361757822985, 0.516727937792041, 0.332522455597996, 0.38330197583997,
0.533290611073994, 0.366722398789022, 0.316670042390001, 0.416698386385008,
0.46657234767099, 0.733304737793958, 0.416654315848973, 0.433382404566999,
0.416618697195986, 0.399949469809997, 0.733300000000042, 0.416799999999967,
0.36669999999998, 0.433299999999974, 0.449899999999957, 0.616399999999999,
0.398599999999988, 0.433400000000006, 0.599899999999991, 0.249961740134204,
0.366800000000012, 0.466699999999946, 0.450099999999964, 0.300000000000011,
0.466800000000035, 0.366199999999992, 0.300000000000011, 0.7166,
0.483280000000001, 0.383409999999998, 0.366749999999996, 0.399969999999996,
0.699960000000004, 0.61666, 0.582999999999998, 0.449999999999989,
0.4495, 0.367099999999994, 0.416699999999992, 0.16670000000002,
0.483250000000002, 0.367000000000019, 0.399999999999977, 0.583399999999983,
0.516499999999979, 0.449899999999985, 0.466700000000003, 0.433300000000003,
0.199899999999985, 0.433409999999999, 0.383399999999995, 0.416699999999992,
0.416899999999998, 0.417000000000002, 0.4666, 0.400000000000006,
0.282800000000009, 0.349999999999994, 0.299340000000001, 0.566699999999997,
0.566600000000022, 0.4666, 0.466700000000003, 0.466699999999946,
0.483299999999986, 0.416600000000017, 0.516700000000014, 0.533299999999997,
0.333500000000015, 0.433199999999999, 0.61650000000003, 0.550000000000011,
0.683300000000031, 0.38330000000002, 0.449999999999989, 0.433400000000006,
0.483400000000017, 0.449999999999989, 0.466700000000003, 0.46669,
0.399799999999999, 0.416605, 0.399989999999999, 0.416740000000004,
0.366520000000001, 0.416670000000011, 0.583399999999997, 0.44999,
0.550019999999989, 0.383279999999999, 0.333380000000005, 0.450000000000003,
0.433400000000006, 0.565999999999988, 0.433400000000006, 0.383200000000002,
0.549899999999994, 0.383399999999995, 0.549999999999983, 0.383299999999991,
0.466819999999998, 0.716399999999993, 0.566499999999991, 0.400099999999981,
0.533199999999994, 0.400000000000006, 0.616600000000005, 0.733399999999989,
0.38335, 0.449899999999985, 0.449399999999997, 0.566699999999997,
0.5, 0.483300000000014, 0.600099999999998, 0.5, 0.483439999999998,
0.333400000000012, 0.516600000000011, 0.41670000000002, 0.483400000000017,
0.54989999999998, 0.666699999999992, 0.716499999999996, 0.433300000000031,
0.583300000000001, 0.433400000000006, 0.383299999999963, 0.433199999999999,
0.633299999999963, 0.516599999999983, 0.499859999999998, 0.383299999999963,
0.483400000000017, 0.400100000000009, 0.500099999999975, 0.500099999999975,
0.416699999999992, 0.399999999999977, 0.433299999999974, 0.333399999999983,
0.483300000000042, 0.550000000000011, 0.366700000000037, 0.449999999999989,
0.383319999999998, 0.399824, 0.599970000000001, 0.5, 0.399969999999996,
0.483379999999997, 0.550050000000013, 0.399969999999996, 0.366610000000001,
0.400080000000003, 0.450100000000006, 0.683300000000003, 0.383200000000002,
0.599999999999994, 0.583400000000012, 0.383290000000002, 0.349999999999994,
0.333200000000005, 0.416799999999995, 0.566699999999997, 0.516099999999994,
0.38330000000002, 0.382900000000006, 0.383399999999995, 0.466100000000012,
0.366600000000005, 0.36669999999998, 0.433400000000006, 0.800000000000011,
0.616700000000009, 0.433400000000006, 0.16670000000002, 0.599999999999994,
0.516800000000018, 0.533299999999997, 0.550100000000043, 0.699999999999989,
0.38330000000002, 0.416600000000017, 0.366570000000003, 0.400000000000034,
0.466700000000003, 0.666799999999967, 0.583399999999983, 0.400100000000009,
0.716600000000028, 0.599899999999991, 0.61669999999998, 0.416679999999999,
0.466600000000028, 0.550000000000011, 0.599999999999966, 0.300099999999986,
0.216599999999971, 0.5, 0.566699999999969, 0.383399999999995,
0.449900000000014, 0.550099999999986, 0.466600000000028, 0.5,
0.349999999999966, 0.416699999999992, 0.5, 0.583329999999997,
0.400079999999999, 0.333350000000003, 0.39996, 0.449939999999998,
0.400019999999998, 0.433340000000001, 0.450100000000006, 0.549980000000001,
0.466790000000003, 0.25, 0.566599999999994, 0.666700000000006,
0.566099999999992, 0.383399999999995, 0.349999999999994, 0.433290000000003,
0.366700000000009, 0.41640000000001, 0.350100000000026, 0.350000000000023,
0.416699999999992, 0.483299999999986, 0.566699999999997, 0.383299999999991,
0.433400000000006, 0.399900000000002, 0.333400000000001, 0.349999999999994,
0.199999999999989, 0.433399999999978, 0.366800000000012, 0.416600000000017,
0.316900000000032, 0.466700000000003, 0.449999999999989, 0.400109999999998,
0.183199999999999, 0.399900000000002, 0.366600000000005, 0.433300000000031,
0.333300000000008, 0.483399999999961, 0.366700000000037, 0.517300000000034,
0.383399999999995, 0.45010000000002, 0.566800000000001, 0.616600000000005,
0.433499999999981, 0.483299999999986, 0.366199999999992, 0.449450000000006,
0.383399999999995, 0.433399999999949, 0.699999999999989, 0.333399999999983,
0.45010000000002, 0.333499999999958, 0.38344, 0.266697979166521,
0.383198891827298, 0.516606743275602, 0.566645063859099, 0.483036463265194,
0.48340925507739, 0.483681528935506, 0.516593159768306, 0.349836892262601,
0.499657544687992, 0.566733809440009, 0.533366376472998, 0.383299107925993,
0.549978704078995, 0.416578700880009, 0.700037822520983, 0.366653274334993,
0.366637275980992, 0.616626333711991, 0.383385136805998, 0.416589265829003,
0.466635434660986, 0.549884525094996, 0.400077758033007, 0.349995668371008,
1.70000789965499, 0.600099999999998, 0.383400000000023, 0.400100000000009,
0.416799999999995, 0.599900000000019, 0.4666, 0.583300000000008,
0.516500000000008, 0.4666, 0.616700000000009, 0.483400000000017,
0.566199999999981, 0.483400000000017, 0.516699999999958, 0.383299999999963,
0.433400000000006, 0.399999999999977, 0.400000000000034, 0.45010000000002,
0.566800000000001, 0.400000000000034, 0.483400000000017, 0.533299999999997,
0.566700000000026, 0.516500000000008, 0.416500000000042, 0.382863228268405,
0.500099999999975, 0.533400000000029, 0.416699999999992, 0.566700000000026,
0.466700000000003, 0.41659999999996, 0.516700000000014, 0.45010000000002,
0.300099999999986, 0.583399999999983, 0.433400000000006, 0.416600000000017,
0.449999999999989, 0.666700000000048, 0.61669999999998, 0.383330000000001,
0.44997, 0.500050000000002, 0.566670000000002, 0.5167, 0.433310000000006,
0.732889999999998, 0.516690000000001, 0.516800000000003, 0.700000000000003,
0.433400000000006, 0.616600000000005, 0.4161, 0.666599999999988,
0.583300000000008, 0.299999999999983, 0.416500000000013, 0.466699999999999,
0.433300000000003, 0.433500000000009, 0.466499999999996, 0.566800000000001,
0.650000000000006, 0.500100000000003, 0.483399999999989, 0.333280000000002,
0.5, 0.516600000000011, 0.566599999999994, 0.583300000000008,
0.316800000000001, 0.516899999999993, 0.61669999999998, 0.316800000000001,
0.599999999999994, 0.382999999999981, 0.533500000000004, 0.46629999999999,
0.666699999999992, 0.433300000000031, 0.399999999999999, 0.399900000000002,
0.550000000000011, 0.45010000000002, 0.550099999999986, 0.366600000000005,
0.466700000000003, 0.566700000000026, 0.5, 0.366700000000037,
0.316680000000005, 0.566800000000001, 0.416699999999992, 0.766500000000008,
0.816599999999994, 0.449700000000007, 0.583300000000008, 0.499500000000012,
0.516599999999983, 0.399499999999989, 0.532940000000004, 0.583300000000008,
0.533299999999997, 0.5, 0.466599999999971, 0.483200000000011,
0.5, 0.433299999999974, 0.650000000000034, 0.416699999999999,
0.566574, 0.299979999999998, 0.333379999999998, 0.399949999999997,
0.383309999999994, 0.533330000000007, 0.483369999999994, 0.500109999999992,
0.483360000000005, 0.616789999999995, 0.5, 0.400099999999995,
0.5501, 0.599599999999995, 0.433199999999999, 0.416600000000003,
0.483400000000017, 0.316199999999981, 0.800000000000011, 0.616669999999999,
0.599999999999994, 0.483300000000014, 0.316700000000026, 0.533399999999972,
0.549800000000005, 0.450000000000017, 0.466700000000003, 0.41666,
0.516700000000014, 0.5, 0.566600000000022, 0.383400000000023,
0.4666, 0.33329999999998, 0.4666, 0.333300000000008, 0.35004,
0.433300000000003, 0.4666, 0.4666, 0.650100000000009, 0.483400000000017,
0.499900000000025, 0.466700000000003, 0.416679999999999, 0.533400000000029,
0.400100000000009, 0.416800000000023, 0.483299999999986, 0.41700000000003,
0.566599999999994, 0.450000000000045, 1.19999999999999, 0.516700000000014,
0.533399999999972, 0.516599999999983, 0.550000000000011, 0.466700000000003,
0.816700000000026), startingpos = c(8L, 0L, 8L, 8L, 4L, 8L, 4L,
8L, 0L, 0L, 8L, 4L, 4L, 0L, 0L, 0L, 8L, 8L, 0L, 4L, 4L, 4L, 4L,
8L, 4L, 4L, 8L, 8L, 4L, 0L, 0L, 0L, 8L, 4L, 0L, 8L, 0L, 8L, 4L,
0L, 0L, 4L, 4L, 8L, 8L, 0L, 8L, 8L, 0L, 0L, 4L, 4L, 0L, 4L, 0L,
8L, 0L, 8L, 4L, 4L, 0L, 0L, 8L, 8L, 8L, 0L, 0L, 0L, 8L, 0L, 4L,
4L, 8L, 0L, 0L, 8L, 0L, 4L, 8L, 4L, 0L, 4L, 8L, 4L, 8L, 0L, 8L,
0L, 4L, 4L, 4L, 4L, 0L, 4L, 4L, 0L, 0L, 8L, 4L, 8L, 8L, 0L, 8L,
0L, 8L, 4L, 0L, 0L, 0L, 8L, 4L, 4L, 8L, 4L, 8L, 4L, 0L, 4L, 0L,
4L, 0L, 0L, 4L, 8L, 8L, 8L, 8L, 0L, 8L, 4L, 0L, 8L, 4L, 0L, 4L,
0L, 4L, 8L, 8L, 0L, 4L, 0L, 8L, 4L, 0L, 4L, 8L, 4L, 4L, 0L, 8L,
4L, 0L, 4L, 0L, 0L, 4L, 0L, 8L, 0L, 0L, 8L, 8L, 0L, 8L, 8L, 4L,
8L, 0L, 8L, 0L, 8L, 4L, 8L, 0L, 4L, 4L, 0L, 4L, 4L, 4L, 0L, 0L,
4L, 4L, 0L, 8L, 0L, 4L, 4L, 0L, 8L, 8L, 4L, 8L, 8L, 8L, 8L, 0L,
8L, 8L, 8L, 4L, 4L, 4L, 8L, 0L, 0L, 8L, 0L, 4L, 8L, 0L, 4L, 0L,
0L, 8L, 0L, 0L, 4L, 4L, 0L, 0L, 4L, 0L, 4L, 8L, 4L, 8L, 0L, 8L,
4L, 0L, 8L, 8L, 4L, 8L, 4L, 4L, 0L, 4L, 0L, 0L, 0L, 4L, 8L, 0L,
0L, 4L, 0L, 0L, 0L, 4L, 8L, 4L, 0L, 0L, 8L, 4L, 4L, 4L, 4L, 8L,
8L, 8L, 0L, 8L, 8L, 8L, 0L, 8L, 8L, 0L, 4L, 4L, 4L, 4L, 4L, 0L,
8L, 4L, 0L, 8L, 4L, 8L, 8L, 8L, 0L, 0L, 8L, 8L, 0L, 4L, 4L, 0L,
8L, 4L, 4L, 0L, 8L, 4L, 8L, 8L, 8L, 4L, 4L, 8L, 8L, 4L, 8L, 0L,
4L, 4L, 4L, 0L, 8L, 4L, 8L, 8L, 0L, 8L, 0L, 0L, 4L, 0L, 0L, 8L,
4L, 8L, 8L, 4L, 8L, 0L, 4L, 4L, 4L, 8L, 8L, 0L, 4L, 4L, 8L, 0L,
0L, 4L, 0L, 4L, 8L, 8L, 0L, 8L, 4L, 0L, 0L, 4L, 0L, 8L, 4L, 4L,
0L, 0L, 4L, 0L, 0L, 4L, 8L, 8L, 8L, 0L, 0L, 4L, 4L, 8L, 8L, 4L,
8L, 0L, 0L, 8L, 8L, 0L, 8L, 8L, 8L, 8L, 4L, 0L, 4L, 0L, 4L, 8L,
0L, 0L, 8L, 0L, 4L, 4L, 8L, 4L, 0L, 4L, 4L, 4L, 0L, 8L, 4L, 8L,
0L, 4L, 4L, 0L, 8L, 0L, 0L, 4L, 4L, 0L, 0L, 4L, 0L, 0L, 8L, 8L,
8L, 8L, 0L, 4L, 0L, 8L, 0L, 4L, 4L, 4L, 0L, 0L, 8L, 8L, 8L, 4L,
0L, 8L, 8L, 8L, 4L, 4L, 8L, 8L, 8L, 0L, 8L, 0L, 8L, 4L, 4L, 8L,
0L, 0L, 0L, 4L, 0L, 0L, 8L, 0L, 8L, 8L, 4L, 8L, 0L, 8L, 8L, 4L,
0L, 8L, 0L, 4L, 8L, 8L, 8L, 0L, 4L, 8L, 8L, 4L, 8L, 4L, 8L, 0L,
4L, 4L, 0L, 0L, 4L, 4L, 4L, 0L, 8L, 0L, 4L, 4L, 4L), startingpos_scaled = c(1.17470509188833,
-1.28660587865873, 1.17470509188833, 1.17470509188833, -0.0559503933851987,
1.17470509188833, -0.0559503933851987, 1.17470509188833, -1.28660587865873,
-1.28660587865873, 1.17470509188833, -0.0559503933851987, -0.0559503933851987,
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1.17470509188833, 1.17470509188833, -0.0559503933851987, 1.17470509188833,
1.17470509188833, 1.17470509188833, 1.17470509188833, -1.28660587865873,
1.17470509188833, 1.17470509188833, 1.17470509188833, -0.0559503933851987,
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1.17470509188833, -0.0559503933851987, -1.28660587865873, 1.17470509188833,
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), pNum = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L, 10L,
10L, 10L, 10L, 10L)), row.names = c(NA, 500L), class = "data.frame")
# models
quadratic <- glmer(formula = FirstSteeringTime ~ I(startingpos_scaled^2) + (1 | pNum),
family = Gamma(link = "identity"),
data = dat)
linear <- glmer(formula = FirstSteeringTime ~ startingpos_scaled + (1 | pNum),
family = Gamma(link = "identity"),
data = dat)
anova(quadratic, linear, test = "Chisq")
Data: dat
Models:
quadratic: FirstSteeringTime ~ I(startingpos_scaled^2) + (1 | pNum)
linear: FirstSteeringTime ~ startingpos_scaled + (1 | pNum)
Df AIC BIC logLik deviance Chisq Chi Df Pr(>Chisq)
quadratic 4 -736.42 -719.56 372.21 -744.42
linear 4 -744.14 -727.28 376.07 -752.14 7.7248 0 < 2.2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
This shows that the linear model is the better fit (lower AIC, lower deviance and significant chi squared.
However I was thinking of another way to compare the models. Would it be valid to compute individual regressions (linear and quadratic) for each subject, and then compare the coefficients using a t-test? For example:
quad_coefs <- c()
linear_coefs <- c()
for (i in c(1,10)){
# Quadratic
# Create temporary data frame:
df_tmp <- dat[dat$pNum == i,]
# Perform regression:
reg_result <- lm(FirstSteeringTime ~ I(startingpos^2), data = df_tmp)
# Get coefficient:
tmp_coef <- coef(reg_result)
# Store coefficient and intercept for each subject:
quad_coefs[i] <- tmp_coef[2]
# linear
# Perform regression:
reg_result <- lm(FirstSteeringTime ~ startingpos, data = df_tmp)
# Get coefficient:
tmp_coef <- coef(reg_result)
# Store coefficient and intercept for each subject:
linear_coefs[i] <- tmp_coef[2]
}
linear_coefs <- na.omit(linear_coefs)
quad_coefs <- na.omit(quad_coefs)
t.test(linear_coefs, quad_coefs)
Welch Two Sample t-test
data: linear_coefs and quad_coefs
t = -1.2629, df = 1.0211, p-value = 0.4231
alternative hypothesis: true difference in means is not equal to 0
95 percent confidence interval:
-0.05398666 0.04378464
sample estimates:
mean of x mean of y
-0.0056349833 -0.0005339694
If a coefficient is the size of the effect of my explanatory variable on my dependent variable and if I have a significant difference between quadratic and linear coefficients, could I conclude that the model coefficient that was larger was the better fit?
Any thoughts and advice would be most appreciated, thank you!