3
$\begingroup$

I am using the forecast package by Prof Hyndman, and have had success fitting ARIMA models to excess mortality (from the COVID-19 pandemic) data. I am currently trying to produce plots for cumulative excess deaths, but am unsure how to proceed about producing prediction intervals for these plots.

In more detail, I am fitting an ARIMA model using monthly mortalaity (rate) data from January 2000 to Feburary 2020 via the auto.arima() function. I then use forecast() to work out the counterfactual deaths for March 2020- March 2021 (deaths that would have occurred in the absence of the pandemic). This also gives me prediction intervals for the counterfactual deaths. However, I want to produce a plot for cumulative excess death rates starting from March 2020. If this were a normal linear model, then to work out the confidence intervals I would simply use the following:

data$cumse[1]<-sqrt(data$se[1]^2)
for(i in 2:nrow(data)){
  data$cumse[i]<-sqrt(data$cumse[i-1]^2 + data$se[i]^2)
}

where data$se is the standard error for my counterfactual deaths for March 2020-March 2021, and data$cumse would be the standard error for the cumulative excess deaths. To then produce the prediction intervals, I would simply take the bounds to be data$cumexcess$\pm$1.96*data$cumse.

However, my ARIMA model contains AR terms so I don't think the above would be appropriate as it assumes independence. Please could someone help me work out how to produce prediction intervals in this scenario?

$\endgroup$

1 Answer 1

3
$\begingroup$

If auto.arima handles excess rates $\Delta x_t$ and produces interval forecasts, it will trivially handle cumulative excess rates $x_t$ (by first-differencing them), too. Supply the cumulatively summed series $x_t$ to auto.arima, and you will get the forecast interval for it.

$\endgroup$

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge you have read our privacy policy.

Not the answer you're looking for? Browse other questions tagged or ask your own question.