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I have two independent samples X and Y where $x_i \sim F$ and $y_i \sim G$. Two different estimators A and B map X to $x_0$ and Y to $y_0$ respectively. I'd like to compare $x_0$ and $y_0$. The method addressed in https://web.as.uky.edu/statistics/users/pbreheny/621/F12/notes/10-11.pdf isn't suitable as I have two different estimators.

What bootstrap hypothesis test should I use?

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Problem solved. Construct a confidence interval from the difference between the estimates of bootstrap samples of X and Y.

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